Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
pypi: dp
Automatically transform recursive functions to dynamic programmingPapers that mentioned: 13
pypi: nucleotide
An Scons library which wraps interface of various compilers in to one universal.Papers that mentioned: 12
bioconductor: zinbwave
Zero-Inflated Negative Binomial Model for RNA-Seq DataPapers that mentioned: 12
pypi: fmriprep
A robust and easy-to-use pipeline for preprocessing of diverse fMRI dataPapers that mentioned: 12
cran: ConR
Computation of Parameters Used in Preliminary Assessment of Conservation StatusPapers that mentioned: 12
pypi: CLES
Calculate common language effect size (CLES) for 2 paired or independent samplesPapers that mentioned: 12
bioconductor: pRoloc
A unifying bioinformatics framework for spatial proteomicsPapers that mentioned: 12
cran: RANN
Fast Nearest Neighbour Search (Wraps ANN Library) Using L2 MetricPapers that mentioned: 12
pypi: rmsd
Calculate root-mean-square deviation (RMSD) between two sets of cartesian coordinates (XYZ or PDB format), using rotation (fx. Kabsch algorithm), atom reordering (fx. Hungarian algorithm), and axis reflections, resulting in the minimal RMSD.Papers that mentioned: 12
cran: naniar
Data Structures, Summaries, and Visualisations for Missing DataPapers that mentioned: 12
pypi: fft
FFT: Teaching functional programming with a funds transfer examplePapers that mentioned: 12
bioconductor: categoryCompare
Meta-analysis of high-throughput experiments using feature annotationsPapers that mentioned: 12
cran: ESEA
Discovering the Dysregulated Pathways based on Edge Set Enrichment AnalysisPapers that mentioned: 12
bioconductor: OLIN
Optimized local intensity-dependent normalisation of two-color microarraysPapers that mentioned: 12
bioconductor: miRNAtap
miRNAtap: microRNA Targets - Aggregated PredictionsPapers that mentioned: 12
cran: Bchron
Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase ModellingPapers that mentioned: 12
bioconductor: mzR
parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)Papers that mentioned: 12
cran: InfiniumPurify
Estimate and Account for Tumor Purity in Cancer Methylation Data AnalysisPapers that mentioned: 12
bioconductor: ensembldb
Utilities to create and use Ensembl-based annotation databasesPapers that mentioned: 12
bioconductor: EnrichmentBrowser
Seamless navigation through combined results of set-based and network-based enrichment analysisPapers that mentioned: 12
cran: ModelGood
Papers that mentioned: 12cran: CARBayes
Spatial Generalised Linear Mixed Models for Areal Unit DataPapers that mentioned: 12
bioconductor: iCARE
A Tool for Individualized Coherent Absolute Risk Estimation (iCARE)Papers that mentioned: 12
cran: asremlPlus
Augments 'ASReml-R' in Fitting Mixed Models and Packages Generally in Exploring Prediction DifferencesPapers that mentioned: 12
cran: minerva
Maximal Information-Based Nonparametric Exploration for Variable AnalysisPapers that mentioned: 12
pypi: Aggrescan3D
Aggrescan3D - protein aggregation analysis standalone applicationPapers that mentioned: 12
pypi: ab
A/B Testing Framework for Python with optional Multi-armed bandit implementationPapers that mentioned: 12