Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: InfiniumPurify

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/InfiniumPurify

Estimate and Account for Tumor Purity in Cancer Methylation Data Analysis
1 version
Latest release: over 7 years ago
122 downloads last month

Papers Mentioning InfiniumPurify 12

10.3389/fgene.2018.00321

DECtp: Calling Differential Gene Expression Between Cancer and Normal Samples by Integrating Tumor Purity Information
Cited by: 7
Author(s): Weiwei Zhang, Hang Long, Binsheng He, Jialiang Yang
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2021.642759

The Analysis of Gene Expression Data Incorporating Tumor Purity Information
Cited by: 1
Author(s): Seungjun Ahn, Tyler Grimes, Somnath Datta
Software Mentions: 4
Published: about 3 years ago

10.1038/s41389-020-00245-3

Histoepigenetic analysis of the mesothelin network within pancreatic ductal adenocarcinoma cells reveals regulation of retinoic acid receptor gamma and AKT by mesothelin
Cited by: 6
Author(s): Eugene Lurie, Dongliang Liu, Emily L. LaPlante, Lillian R Thistlethwaite, Qizhi Yao, Aleksandar Milosavljevic
Software Mentions: 4
Published: about 4 years ago

10.1186/s12920-020-00780-3

Pan-cancer analysis of differential DNA methylation patterns
Cited by: 7
Author(s): Mai Shi, Stephen Kwok‐Wing Tsui, Hao Wu, Yingying Wei
Software Mentions: 4
Published: almost 4 years ago

10.1186/s13059-016-1143-5

Estimating and accounting for tumor purity in the analysis of DNA methylation data from cancer studies
Cited by: 98
Author(s): Xiaoqi Zheng, Zhang Nai-qian, Hua‐Jun Wu, Hao Wu
Software Mentions: 3
Published: over 7 years ago

10.1186/s12859-019-3014-z

RF_Purify: a novel tool for comprehensive analysis of tumor-purity in methylation array data based on random forest regression
Cited by: 31
Author(s): Pascal Johann, Natalie Jäger, Stefan M. Pfister, Martin Sill
Software Mentions: 2
Published: about 5 years ago

10.1186/s12859-019-3227-1

PEIS: a novel approach of tumor purity estimation by identifying information sites through integrating signal based on DNA methylation data
Cited by: 2
Author(s): Shudong Wang, Lihua Wang, Yuanyuan Zhang, Shanchen Pang, Xinzeng Wang
Software Mentions: 2
Published: almost 5 years ago

10.1038/s42003-019-0736-4

Diversity spectrum analysis identifies mutation-specific effects of cancer driver genes
Cited by: 8
Author(s): Xiaobao Dong, Dandan Huang, Xianfu Yi, Shijie Zhang, Zhao Wang, Bin Yan, Pak C. Sham, Kexin Chen, Dariusz Plewczynski
Software Mentions: 1
Published: over 4 years ago

10.1186/s13148-021-01085-7

DNA methylation profiling for molecular classification of adult diffuse lower-grade gliomas
Cited by: 23
Author(s): Sandra Ferreyra Vega, Thomas Olsson Bontell, Alba Corell, Anja Smits, Asgeir Store Jakola, Helena Carén
Software Mentions: 1
Published: over 3 years ago

10.1002/1878-0261.12482

<i>SIPA1L3</i> methylation modifies the benefit of smoking cessation on lung adenocarcinoma survival: an epigenomic–smoking interaction analysis
Cited by: 16
Author(s): Ruyang Zhang, Lihui Lai, Xuesi Dong, Jieyu He, Dongfang You, Chao Chen, Lijuan Lin, Ying Zhu, Hui Huang, Sipeng Shen, Liangmin Wei, Xin Chen, Yichen Guo, Liya Liu, Su Li, Andrea T. Shafer, Sebastian Morán, Thomas Fleischer, Maria Moksnes Bjaanæs, Anna Karlsson, Maria Planck, Johan Staaf, Åslaug Helland, Manel Esteller, Yongyue Wei, Feng Chen, David C. Christiani
Software Mentions: 1
Published: over 5 years ago

10.1002/jcsm.12670

Comment on ‘The expression landscape of cachexia‐inducing factors in human cancers’ by Freire <i>et al</i>.
Cited by: 0
Author(s): Longxiang Xie, Xiangqian Guo
Software Mentions: 1
Published: over 3 years ago

10.1186/s12864-019-6412-8

Putative biomarkers for predicting tumor sample purity based on gene expression data
Cited by: 17
Author(s): Yuanyuan Li, David M. Umbach, Adrienna Bingham, Qi-Jing Li, Yuan Zhuang, Leping Li
Software Mentions: 1
Published: almost 5 years ago