Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: PoiClaClu
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PoiClaClu
Classification and Clustering of Sequencing Data Based on a
Poisson Model
4 versions
Latest release: almost 6 years ago
2 dependent packages
575 downloads last month
Papers Mentioning PoiClaClu 12
10.1371/journal.pcbi.1003531
Waste Not, Want Not: Why Rarefying Microbiome Data Is InadmissibleCited by: 2,083
Author(s): Paul J. McMurdie, Susan Holmes
Software Mentions: 17
Published: over 10 years ago
10.3390/ijms21124217
Transcriptome, Spliceosome and Editome Expression Patterns of the Porcine Endometrium in Response to a Single Subclinical Dose of Salmonella Enteritidis LipopolysaccharideCited by: 6
Author(s): Łukasz Paukszto, Anita Mikołajczyk, J Jastrzebski, Marta Majewska, Kamil Dobrzyń, Marta Kieżun, Tadeusz Kamiński
Software Mentions: 11
Published: over 4 years ago
10.3390/cells9030779
Transcriptomic Insights into Mechanisms of Early Seed Maturation in the Garden Pea (Pisum sativum L.)Cited by: 12
Author(s): Yury V. Malovichko, O. Y. Shtark, Ekaterina N. Vasileva, Anton A. Nizhnikov, Kirill S. Antonets
Software Mentions: 10
Published: over 4 years ago
10.1186/s12867-018-0111-x
Coincidence cloning recovery of Brucella melitensis RNA from goat tissues: advancing the in vivo analysis of pathogen gene expression in brucellosisCited by: 4
Author(s): Paola M. Boggiatto, Daniel Fitzsimmons, Darrell O. Bayles, David P. Alt, Catherine E. Vrentas, Steven C. Olsen
Software Mentions: 9
Published: over 6 years ago
10.1186/s12864-021-07720-0
Comparative neurotranscriptomics reveal widespread species differences associated with bondingCited by: 5
Author(s): Joel A. Tripp, Alejandro Berrío, Lisa A. McGraw, Mikhail V. Matz, Jamie K. Davis, Kiyoshi Inoue, James W. Thomas, Larry J. Young, Steve Phelps
Software Mentions: 6
Published: over 3 years ago
10.3389/fmicb.2019.00974
Identifying the Growth Modulon of Corynebacterium glutamicumCited by: 8
Author(s): Thorsten Haas, Michaela Graf, Alexander Nieß, Tobias Busche, Jörn Kalinowski, Bastian Blombach, Ralf Takors
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pone.0182507
A comprehensive simulation study on classification of RNA-Seq dataCited by: 26
Author(s): Gökmen Zararsız, Dinçer Göksülük, Selçuk Korkmaz, Vahap Eldem, Gözde Ertürk Zararsız, İzzet Paruğ Duru, Ahmet Öztürk
Software Mentions: 5
Published: about 7 years ago
10.1186/s12864-017-4391-1
Profiling the onset of somatic embryogenesis in ArabidopsisCited by: 37
Author(s): Enrico Magnani, José M. Jiménez‐Gómez, Ludivine Soubigou‐Taconnat, Loïc Lepiniec, Elisa Fiume
Software Mentions: 4
Published: almost 7 years ago
10.1186/s40168-018-0550-0
Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomesCited by: 67
Author(s): Johannes Alneberg, Christofer M. G. Karlsson, Anna-Maria Divne, Claudia Bergin, Félix Homa, Markus V. Lindh, Luisa W. Hugerth, Thijs J. G. Ettema, Stefan Bertilsson, Anders F. Andersson, Jarone Pinhassi
Software Mentions: 4
Published: about 6 years ago
10.1186/s12989-017-0239-8
Maternal engineered nanomaterial inhalation during gestation alters the fetal transcriptomeCited by: 36
Author(s): Phoebe A. Stapleton, Quincy A. Hathaway, C.E. Nichols, Alaeddin B. Abukabda, Mark V. Pinti, Danielle L. Shepherd, Carroll R. McBride, Jinghai Yi, Vincent Castranova, John M. Hollander, Timothy R. Nurkiewicz
Software Mentions: 4
Published: almost 7 years ago
10.1038/s41419-019-1402-y
Subverted regulation of Nox1 NADPH oxidase-dependent oxidant generation by protein disulfide isomerase A1 in colon carcinoma cells with overactivated KRasCited by: 17
Author(s): Tiphany De Bessa, Alessandra Pagano, Ana Iochabel Soares Moretti, Percíllia Oliveira, Samir Andrade Mendonça, Hervé Kovacic, Francisco Rafael Martins Laurindo
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0077503
A Hierarchical Poisson Log-Normal Model for Network Inference from RNA Sequencing DataCited by: 26
Author(s): Mélina Gallopin, Andrea Rau, Florence Jaffrézic
Software Mentions: 1
Published: about 11 years ago