Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/ijms21124217

https://doi.org/10.3390/ijms21124217

Transcriptome, Spliceosome and Editome Expression Patterns of the Porcine Endometrium in Response to a Single Subclinical Dose of Salmonella Enteritidis Lipopolysaccharide

Cited by: 6
Author(s): Łukasz Paukszto, Anita Mikołajczyk, J Jastrzebski, Marta Majewska, Kamil Dobrzyń, Marta Kieżun, Tadeusz Kamiński
Published: over 4 years ago

Software Mentions 11

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: maser
Mapping Alternative Splicing Events to pRoteins
Papers that mentioned: 3
cran: CPAT
Change Point Analysis Tests
Papers that mentioned: 299
cran: gProfileR
Interface to the 'g:Profiler' Toolkit
Papers that mentioned: 56
cran: PoiClaClu
Classification and Clustering of Sequencing Data Based on a Poisson Model
Papers that mentioned: 12
pypi: 0
0
Papers that mentioned: 1,265
pypi: Circos
Circos plots in Python!
Papers that mentioned: 2,252
pypi: CPAT
CPAT (Coding Potential Assessment Tool)
Papers that mentioned: 299
pypi: rmats2sashimiplot
rmats2sashimiplot
Papers that mentioned: 8
pypi: SUPPA
A tool to study splicing across multiple conditions at high speed and accuracy.
Papers that mentioned: 67