pypi: SUPPA | Projects | Ecosyste.ms: Papers

10.12688/f1000research.8900.2

DRIMSeq: a Dirichlet-multinomial framework for multivariate count outcomes in genomics
Cited by: 105
Author(s): Małgorzata Nowicka, Mark D. Robinson
Software Mentions: 14
Published: about 8 years ago

Transcriptome, Spliceosome and Editome Expression Patterns of the Porcine Endometrium in Response to a Single Subclinical Dose of Salmonella Enteritidis Lipopolysaccharide
Cited by: 6
Author(s): Łukasz Paukszto, Anita Mikołajczyk, J Jastrzebski, Marta Majewska, Kamil Dobrzyń, Marta Kieżun, Tadeusz Kamiński
Software Mentions: 11
Published: over 4 years ago

10.3390/ijms20061510

Placenta Transcriptome Profiling in Intrauterine Growth Restriction (IUGR)
Cited by: 48
Author(s): Marta Majewska, Aleksandra Lipka, Łukasz Paukszto, J Jastrzebski, Karol Szeszko, Marek Gowkielewicz, Ewa Lepiarczyk, Marcin Jóźwik, Mariusz Majewski
Software Mentions: 10
Published: over 5 years ago

10.1186/s13059-021-02261-x

Long-read transcriptome sequencing reveals abundant promoter diversity in distinct molecular subtypes of gastric cancer
Cited by: 37
Author(s): Kie Kyon Huang, Jiawen Huang, Jeanie Wu, Ming‐Hui Lee, Su Ting Tay, Vikrant Kumar, R. Kalpana, Nisha Padmanabhan, Chong Xu, Angie Lay Keng Tan, Charlene Chan, Dennis Kappei, Jonathan Göke, Patrick Tan
Software Mentions: 8
Published: almost 4 years ago

10.12688/f1000research.17916.1

Relative Abundance of Transcripts (RATs): Identifying differential isoform abundance from RNA-seq
Cited by: 19
Author(s): Kimon Froussios, Kira Mourão, Gordon G. Simpson, Geoffrey J. Barton, Nicholas J. Schurch
Software Mentions: 7
Published: almost 6 years ago

10.7554/eLife.49874

Discovery proteomics in aging human skeletal muscle finds change in spliceosome, immunity, proteostasis and mitochondria
Cited by: 114
Author(s): Ceereena Ubaida‐Mohien, Alexey E. Lyashkov, Marta González-Freire, Ravi Tharakan, Michelle Shardell, Ruin Moaddel, Richard D. Semba, Chee W. Chia, Myriam Gorospe, Ranjan Sen, Luigi Ferrucci
Software Mentions: 7
Published: about 5 years ago

10.3389/fpls.2020.619404

Barley Anther and Meiocyte Transcriptome Dynamics in Meiotic Prophase I
Cited by: 18
Author(s): Abdellah Barakate, Jamie Orr, Miriam Schreiber, Isabelle Colas, Dominika Lewandowska, Nicola McCallum, Malcolm Macaulay, Jenny Morris, Mikel Arrieta, Pete E. Hedley, Luke Ramsay, Robbie Waugh
Software Mentions: 7
Published: almost 4 years ago

10.1093/bib/bbz126

Systematic evaluation of differential splicing tools for RNA-seq studies
Cited by: 99
Author(s): Arfa Mehmood, Asta Laiho, Mikko S Venäläinen, Aidan McGlinchey, Ning Wang, Laura L. Elo
Software Mentions: 7
Published: about 5 years ago

10.1186/s12859-019-2947-6

Yanagi: Fast and interpretable segment-based alternative splicing and gene expression analysis
Cited by: 3
Author(s): Mohamed K. Gunady, Stephen M. Mount, Héctor Corrada Bravo
Software Mentions: 5
Published: over 5 years ago

10.1186/s12864-020-6769-8

High-resolution profile of transcriptomes reveals a role of alternative splicing for modulating response to nitrogen in maize
Cited by: 20
Author(s): Yuancong Wang, Jing Xu, Min Ge, Lei Ning, Meng-Mei Hu, Han Zhao
Software Mentions: 5
Published: over 4 years ago

10.1111/pbi.12926

Genome and evolution of the shade‐requiring medicinal herb Panax ginseng
Cited by: 120
Author(s): Nam Hoon Kim, Murukarthick Jayakodi, Sang Choon Lee, Beom Soon Choi, Woojong Jang, Junki Lee, Hyun Hee Kim, Nomar Espinosa Waminal, Meiyappan Lakshmanan, Binh van Nguyen, Yun Sun Lee, Hyun Seung Park, Hyun Jo Koo, Jee Young Park, Sampath Perumal, Ho Jun Joh, Hana Lee, Jin‐Kyung Kim, In Seo Kim, Kyung‐Hee Kim, Lokanand Koduru, Kyo Bin Kang, Sang Hyun Sung, Yeisoo Yu, Daniel Park, Doil Choi, Eun-Young Seo, Seungill Kim, Young Chang Kim, Dong Yun Hyun, Youn‐Il Park, Chang-Soo Kim, Tae Ho Lee, Hyun Uk Kim, Moon-Soo Soh, Liu Yi, Jun Gyo In, Heui-Soo Kim, Yong Min Kim, Deok Chun Yang, Rod A. Wing, Dong-Yup Lee, Andrew H. Paterson, Tae Jin Yang
Software Mentions: 5
Published: over 6 years ago

10.1186/s13059-017-1332-x

Adaptation of iCLIP to plants determines the binding landscape of the clock-regulated RNA-binding protein AtGRP7
Cited by: 71
Author(s): Katja Meyer, Tino Köster, Christiané Nolte, Claus Weinholdt, Martin Lewinski, Ivo Große, Dorothee Staiger
Software Mentions: 5
Published: about 7 years ago

10.1128/mBio.02525-20

CRNKL1 Is a Highly Selective Regulator of Intron-Retaining HIV-1 and Cellular mRNAs
Cited by: 10
Author(s): Xianpei Han, Emanuel Wyler, Miha Milek, Bastian Grewe, Philipp Kirchner, Arif B. Ekici, Ana Beatriz Oliveira Villela Silva, Doris Jungnickl, Florian Full, Marco Thomas, Markus Landthaler, Armin Ensser, Klaus Überla
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41398-021-01431-6

Mapping the transcriptomics landscape of post-traumatic stress disorder symptom dimensions in World Trade Center responders
Cited by: 3
Author(s): Pei‐Fen Kuan, Xiaohua Yang, Ruwei Xu, Chang Che, Monika A. Waszczuk, Roman Kotov, Sean Clouston, Prashant Singh, Sean T. Glenn, Eduardo Cortes Gomez, Jianmin Wang, Evelyn J. Bromet, Benjamin J. Luft
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-020-72291-1

SMRT- and Illumina-based RNA-seq analyses unveil the ginsinoside biosynthesis and transcriptomic complexity in Panax notoginseng
Cited by: 9
Author(s): Dan Zhang, Wei Li, Zhongjian Chen, Fang Wei, Yunlong Liu, Li‐Zhi Gao
Software Mentions: 4
Published: over 4 years ago

10.3390/genes12060896

Comparative Transcriptome Analysis Reveals Sex-Based Differences during the Development of the Adult Parasitic Wasp Cotesia vestalis (Hymenoptera: Braconidae)
Cited by: 2
Author(s): Yuenan Zhou, Pei‐Ling Yang, Shuang Xie, Min Shi, Jianhua Huang, Zhizhi Wang, Xue-Xin Chen
Software Mentions: 4
Published: over 3 years ago

10.1534/genetics.118.301515

PRP4KA, a Putative Spliceosomal Protein Kinase, Is Important for Alternative Splicing and Development in Arabidopsis thaliana
Cited by: 17
Author(s): Tohru Kanno, Peter Venhuizen, Wen Teng, Wen-Dar Lin, Phebe Chiou, Maria Kalyna, A. J. M. Matzke, Marjori Matzke
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-37813-y

Both anti-inflammatory and antiviral properties of novel drug candidate ABX464 are mediated by modulation of RNA splicing
Cited by: 41
Author(s): Audrey Vautrin, Laurent Manchon, Aude Garcel, Noëlie Campos, Laure Lapasset, Abdelhamid Mahdi Laaref, Roman Bruno, Marie Gislard, Emeric Dubois, Didier Scherrer, J Hartmut Ehrlich, Jamal Tazi
Software Mentions: 4
Published: almost 6 years ago

10.7554/eLife.15614

Hypothalamic transcriptomes of 99 mouse strains reveal trans eQTL hotspots, splicing QTLs and novel non-coding genes
Cited by: 35
Author(s): Yehudit Hasin-Brumshtein, Khan Ah, Farhad Hormozdiari, Calvin Pan, Brian W. Parks, Vladislav Petyuk, Paul Piehowski, Anneke Brümmer, Matteo Pellegrini, Xinshu Xiao, Eleazar Eskin, Richard Smith, Aldons J. Lusis, Desmond J. Smith
Software Mentions: 4
Published: over 8 years ago

10.1186/s12864-015-1704-0

A semi-supervised approach uncovers thousands of intragenic enhancers differentially activated in human cells
Cited by: 6
Author(s): Juan González-Vallinas, Amadís Pagès, Babita Singh, Eduardo Eyras
Software Mentions: 4
Published: over 9 years ago

10.1186/s12864-019-6163-6

PacBio single-molecule long-read sequencing shed new light on the complexity of the Carex breviculmis transcriptome
Cited by: 20
Author(s): Ke Teng, Wan Teng, Haifeng Wen, Yuesen Yue, Weier Guo, Juying Wu, Xing Fan
Software Mentions: 4
Published: about 5 years ago

10.3389/fbioe.2020.00035

Dynamic Alternative Splicing During Mouse Preimplantation Embryo Development
Cited by: 13
Author(s): Yongzhong Xing, Weihao Yang, Guoqing Liu, Xiangjun Cui, Hu Meng, Hongyu Zhao, Xingbo Zhao, Jun Li, Zhe Liu, Michael Q. Zhang, Liang Cai
Software Mentions: 4
Published: almost 5 years ago

10.3389/fgene.2021.664260

Large-Scale Multiplexing Permits Full-Length Transcriptome Annotation of 32 Bovine Tissues From a Single Nanopore Flow Cell
Cited by: 11
Author(s): Michelle M. Halstead, Alma Islas–Trejo, Daniel Estanislao Goszczynski, Juan F. Medrano, Huaijun Zhou, Pablo J. Ross
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1009411

ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer
Cited by: 5
Author(s): Juan L. Trincado, Marina Reixachs‐Solé, Judith Pérez-Granado, Tim Fugmann, Ferrán Sanz, Jun Yokota, Eduardo Eyras
Software Mentions: 4
Published: over 3 years ago

10.3389/fgene.2019.00384

Reviving the Transcriptome Studies: An Insight Into the Emergence of Single-Molecule Transcriptome Sequencing
Cited by: 81
Author(s): Bo Wang, Vivek Kumar, Andrew Olson, Doreen Ware
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2021.698602

Investigation Into Different Wood Formation Mechanisms Between Angiosperm and Gymnosperm Tree Species at the Transcriptional and Post-transcriptional Level
Cited by: 2
Author(s): Hui Li, Guanghui Chen, Hongying Pang, Qiao Wang, Xinren Dai
Software Mentions: 4
Published: over 3 years ago

10.3389/fpls.2020.578100

Alternative Splicing Enhances the Transcriptome Complexity of Liriodendron chinense
Cited by: 12
Author(s): Zhonghua Tu, Yu-Fang Shen, Shaoying Wen, Yaxian Zong, Huogen Li
Software Mentions: 3
Published: about 4 years ago

10.1186/s12864-021-07366-y

PacBio full-length transcriptome of wild apple (Malus sieversii) provides insights into canker disease dynamic response
Cited by: 18
Author(s): Xiaojie Liu, Xiaoshuang Li, Xiangying Wen, Yan Zhang, Yu Ding, Yiheng Zhang, Bei Gao, Daoyuan Zhang
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-020-80168-6

Global tissue transcriptomic analysis to improve genome annotation and unravel skin pigmentation in goldfish
Cited by: 14
Author(s): Wei Gan, Yu Wen Chung-Davidson, Zelin Chen, Shiying Song, Weicheng Cui, Wei He, Qinghua Zhang, Weiming Li, Mingyou Li, Jianfeng Ren
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12864-018-4515-2

Differential expression of mRNA isoforms in the skeletal muscle of pigs with distinct growth and fatness profiles
Cited by: 30
Author(s): Tainã Figueiredo Cardoso, Raquel Quintanilla, Anna Castelló, Rayner González-Prendes, M. Amills, Ángela Cánovas
Software Mentions: 3
Published: almost 7 years ago

10.1002/iub.1887

Alternate splicing of transcripts upon Mycobacterium tuberculosis infection impacts the expression of functional protein domains
Cited by: 13
Author(s): Haroon Kalam, Kartikeya Singh, Komal Chauhan, Mary F. Fontana, Dhiraj Kumar
Software Mentions: 3
Published: over 6 years ago

10.3389/fcell.2020.603815

Genome-Wide Integrated Analysis Revealed Functions of lncRNA–miRNA–mRNA Interaction in Growth of Intermuscular Bones in Megalobrama amblycephala
Cited by: 14
Author(s): Yulong Chen, Shiming Wan, Qing Li, Xiaoru Dong, Jinghan Diao, Qing Liao, Guiying Wang, Zexia Gao
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12864-019-5438-2

Conserved regulation of RNA processing in somatic cell reprogramming
Cited by: 4
Author(s): Alexander Kanitz, Afzal Pasha Syed, Keisuke Kaji, Mihaela Zavolan
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41438-021-00543-w

Integration of early disease-resistance phenotyping, histological characterization, and transcriptome sequencing reveals insights into downy mildew resistance in impatiens
Cited by: 2
Author(s): Ze Peng, Yan‐Hong He, Saroj Parajuli, Qi You, Weining Wang, Krishna Bhattarai, Aaron J. Palmateer, Zhanao Deng
Software Mentions: 3
Published: over 3 years ago

10.3389/fgene.2020.00462

Isoform Sequencing Provides Insight Into Freezing Response of Common Wheat (Triticum aestivum L.)
Cited by: 4
Author(s): Xingwei Zheng, Mengmeng Shi, Jian Wang, Na Yang, Ke Wang, Jilong Xi, Chong Wu, Tianyuan Xi, Jun Zheng, Jiancheng Zhang
Software Mentions: 3
Published: over 4 years ago

10.3390/ijms18071378

Multiple Isoforms of ANRIL in Melanoma Cells: Structural Complexity Suggests Variations in Processing
Cited by: 34
Author(s): Debina Sarkar, Ali Oghabian, Pasani K. Bodiyabadu, Wayne R. Joseph, Euphemia Leung, Graeme J. Finlay, Bruce C. Baguley, Marjan Askarian-Amiri
Software Mentions: 3
Published: over 7 years ago

10.1186/s13072-019-0307-4

DNA methylation is maintained with high fidelity in the honey bee germline and exhibits global non-functional fluctuations during somatic development
Cited by: 40
Author(s): Keith D. Harris, James P. B. Lloyd, Katherine Domb, Daniel Zilberman, Assaf Zemach
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-020-07277-4

Comparative transcriptome analysis of male and female flowers in Spinacia oleracea L
Cited by: 13
Author(s): Ning Li, Ziwei Meng, Tao Mei, Yueyuan Wang, Yulan Zhang, Shufen Li, Wu‐Jun Gao, Chuan‐Liang Deng
Software Mentions: 3
Published: about 4 years ago

10.1186/s13071-021-05015-7

Full-length transcriptome analysis and identification of transcript structures in Eimeria necatrix from different developmental stages by single-molecule real-time sequencing
Cited by: 4
Author(s): Yang Gao, Zeyang Suding, Xun Hu, Dandan Liu, Shijie Su, Jing Xu, Junjie Hu, Jianping Tao
Software Mentions: 2
Published: about 3 years ago

10.1186/s12870-020-02530-0

Transcriptome analysis of heat stress and drought stress in pearl millet based on Pacbio full-length transcriptome sequencing
Cited by: 65
Author(s): Min Sun, Dejun Huang, Ailing Zhang, İmran Khan, Haidong Yan, Xiaoshan Wang, Xinquan Zhang, Jian Zhang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12870-018-1534-8

Analysis of transcripts and splice isoforms in red clover (Trifolium pratense L.) by single-molecule long-read sequencing
Cited by: 75
Author(s): Yuehui Chao, Jianbo Yuan, Sifeng Li, Siqiao Jia, Liebao Han, Lu Xu
Software Mentions: 2
Published: about 6 years ago

10.1093/bioinformatics/btab050

McSplicer: a probabilistic model for estimating splice site usage from RNA-seq data
Cited by: 6
Author(s): Israa Alqassem, Yash Sonthalia, Erika Klitzke-Feser, Heejung Shim, Stefan Canzar
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-019-6243-7

BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq
Cited by: 44
Author(s): Paulo Rapazote-Flores, Micha Bayer, Linda Milne, Claus Mayer, John Fuller, Wenbin Guo, Pete E. Hedley, Jenny Morris, Claire Halpin, Jason Kam, Sarah M. McKim, Monika Zwirek, M. Cristina Casao, Abdellah Barakate, Miriam Schreiber, Gordon Stephen, Runxuan Zhang, John W. Brown, Robbie Waugh, Craig G. Simpson
Software Mentions: 2
Published: about 5 years ago

10.1038/celldisc.2017.31

Long read reference genome-free reconstruction of a full-length transcriptome from Astragalus membranaceus reveals transcript variants involved in bioactive compound biosynthesis
Cited by: 85
Author(s): Jun Li, Yuka Harata-Lee, Matthew D. Denton, Qi Feng, Judith R. Rathjen, Zhibo Qu, David L. Adelson
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-019-6441-3

SMRT sequencing of a full-length transcriptome reveals transcript variants involved in C18 unsaturated fatty acid biosynthesis and metabolism pathways at chilling temperature in Pennisetum giganteum
Cited by: 12
Author(s): Qingyuan Li, Conglin Xiang, Lin Xu, Jinghua Cui, Shao Ping Fu, Baolin Chen, Shoukun Yang, Pan Wang, Yanfeng Xie, Ming Wei, Zhanchang Wang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fcimb.2021.631545

Full-Length Transcriptome Analysis of Plasmodium falciparum by Single-Molecule Long-Read Sequencing
Cited by: 21
Author(s): Mengquan Yang, Xianwen Shang, Yiqing Zhou, Changhong Wang, Guiying Wei, Jianxia Tang, Meihua Zhang, Yaobao Liu, Jun Cao, Qingfeng Zhang
Software Mentions: 2
Published: almost 4 years ago

10.3389/fgene.2019.00915

Long Read Single-Molecule Real-Time Sequencing Elucidates Transcriptome-Wide Heterogeneity and Complexity in Esophageal Squamous Cells
Cited by: 12
Author(s): Yin-Wei Cheng, Yunmei Chen, Qianqian Zhao, Xing Zhao, Wu Yu, Danze Chen, Lian‐Di Liao, Chen Yang, Qian Yang, Li–Yan Xu, En‐Min Li, Jianzhen Xu
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2021.716163

Transcriptome and Metabolome Analyses of the Flowers and Leaves of Chrysanthemum dichrum
Cited by: 5
Author(s): Hua Liu, Xiaoxi Chen, Hạixia Chen, Jie Lu, Dongliang Chen, Chao Luo, Xi Cheng, Jing Yin, Conglin Huang
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2020.558394

The PacBio Full-Length Transcriptome of the Tea Aphid as a Reference Resource
Cited by: 7
Author(s): Feng Hong, Si-Hua Mo, Xingyu Lin, Jinzhi Niu, Jian Yin, Dong Wei
Software Mentions: 2
Published: about 4 years ago

10.1186/s13059-020-02101-4

Polymorphic mobile element insertions contribute to gene expression and alternative splicing in human tissues
Cited by: 19
Author(s): Xiaolong Cao, Yeting Zhang, Lindsay M. Payer, Hannah Lords, Jared P. Steranka, Kathleen H. Burns, Jinchuan Xing
Software Mentions: 2
Published: over 4 years ago

10.1093/gigascience/giy116

Exploring the genome and transcriptome of the cave nectar bat Eonycteris spelaea with PacBio long-read sequencing
Cited by: 23
Author(s): Ming Wen, Justin H. J. Ng, Feng Zhu, Yok Teng Chionh, Wan Ni Chia, Ian H. Mendenhall, Benjamin Py-H Lee, Aaron T. Irving, Lin‐Fa Wang
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-29086-2

Comprehensive map of age-associated splicing changes across human tissues and their contributions to age-associated diseases
Cited by: 41
Author(s): Kun Wang, Di Wu, Haoyue Zhang, Arabinda Das, Mahashweta Basu, Justin Malin, Kan Cao, Sridhar Hannenhalli
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-48824-8

The Single-molecule long-read sequencing of Scylla paramamosain
Cited by: 14
Author(s): Haifu Wan, Xiaoyun Jia, Pengfei Zou, Ziping Zhang, Yilei Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-019-5794-y

Events of alternative splicing in head and neck cancer via RNA sequencing – an update
Cited by: 4
Author(s): Vishwas Sharma, Amrita Nandan, Harpreet Singh, Suyash Agarwal, Richa Tripathi, Dhirendra N Sinha, Ravi Mehrotra
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms20184426

Hybrid Sequencing of Full-Length cDNA Transcripts of the Medicinal Plant Scutellaria baicalensis
Cited by: 5
Author(s): Ting Gao, Zhichao Xu, Xiaojun Song, Kai Huang, Ying Liu, Jianhe Wei, Xinghua Zhu, Haoran Ren, Chao Sun
Software Mentions: 2
Published: over 5 years ago

10.3390/genes11020207

Evolution of the Small Family of Alternative Splicing Modulators Nuclear Speckle RNA-Binding Proteins in Plants
Cited by: 9
Author(s): Leandro Lucero, Jérémie Bazin, Johan Rodríguez Melo, Fernando Ibáñez, Martín Crespi, Federico Ariel
Software Mentions: 1
Published: almost 5 years ago

10.1534/g3.120.401451

Alternative Splicing Regulation of Anthocyanin Biosynthesis in Camellia sinensis var. assamica Unveiled by PacBio Iso-Seq
Cited by: 16
Author(s): Lijiao Chen, Xin Shi, Bo Nian, Shuangmei Duan, Bin Jiang, Xinghua Wang, Chen Lv, Guanghui Zhang, Yan Ma, Ming Zhao
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2019.01160

Genome-Wide Identification of Splicing Quantitative Trait Loci (sQTLs) in Diverse Ecotypes of Arabidopsis thaliana
Cited by: 16
Author(s): Waqas Khokhar, Musa A. Hassan, Anireddy S. N. Reddy, Saurabh Chaudhary, Ibtissam Jabre, Lee J. Byrne, Naeem H. Syed
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2017.00929

Genome-Wide Transcriptome Analysis Reveals Extensive Alternative Splicing Events in the Protoscoleces of Echinococcus granulosus and Echinococcus multilocularis
Cited by: 16
Author(s): Shuai Liu, Xiaosu Zhou, Lili Hao, Xiangshu Piao, Nan Hou, Qijun Chen
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2021.664974

PacBio Single-Molecule Long-Read Sequencing Provides New Light on the Complexity of Full-Length Transcripts in Cattle
Cited by: 5
Author(s): Tianpeng Chang, Bingxing An, Mang Liang, Xinghai Duan, Lili Du, Wentao Cai, Bo Zhu, Xue Gao, Yan Chen, Lingyang Xu, Lupei Zhang, Huijiang Gao, Junya Li
Software Mentions: 1
Published: over 3 years ago

10.1186/s12864-021-07998-0

Transcriptome profiling of Malus sieversii under freezing stress after being cold-acclimated
Cited by: 12
Author(s): Ping Zhou, Xiaoshuang Li, Xiaojie Liu, Xiangying Wen, Yan Zhang, Daoyuan Zhang
Software Mentions: 1
Published: over 3 years ago

10.1093/dnares/dsz010

The complexity of alternative splicing and landscape of tissue-specific expression in lotus (Nelumbo nucifera) unveiled by Illumina- and single-molecule real-time-based RNA-sequencing
Cited by: 23
Author(s): Yue Zhang, Tonny Maraga Nyong’a, Tao Shi, Pingfang Yang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0217593

Comprehensive transcriptome analysis reveals genes potentially involved in isoflavone biosynthesis in Pueraria thomsonii Benth
Cited by: 21
Author(s): Meijun He, Yiming Yao, Yanni Li, Meng Yang, Li Yu, Bin Wu, Dawei Yu
Software Mentions: 1
Published: over 5 years ago

10.1186/s13059-019-1633-3

Gene editing of the multi-copy H2A.B gene and its importance for fertility
Cited by: 27
Author(s): Nur Diana Anuar, Sebastian Kurscheid, Matthew A. Field, Lei Zhang, Edward J. Rebar, Philip D. Gregory, Thierry Buchou, Josephine Bowles, Peter Koopman, David J. Tremethick, Tatiana Soboleva
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12863-021-00959-2

Whole-transcriptome analysis of differentially expressed genes in the mutant and normal capitula of Chrysanthemum morifolium
Cited by: 12
Author(s): Hua Lee, Chao Luo, Dongliang Chen, Yaqin Wang, Shan Guo, Xiaoxi Chen, Jian Bai, Mingyuan Li, Xinlei Huang, Xi Cheng, Conglin Huang
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22063138

Combined Transcriptome Analysis Reveals the Ovule Abortion Regulatory Mechanisms in the Female Sterile Line of Pinus tabuliformis Carr.
Cited by: 0
Author(s): Zaixin Gong, Rui Han, Li Xu, Hailin Hu, Min Zhang, Qianquan Yang, Zeng Ming, Yuanyuan Zhao, Caixia Zheng
Software Mentions: 1
Published: almost 4 years ago

10.3390/md19070392

Full-Length Transcriptome of Thalassiosira weissflogii as a Reference Resource and Mining of Chitin-Related Genes
Cited by: 8
Author(s): Haomiao Cheng, Chris Bowler, Xiaohui Xing, Vincent Bulone, Zhanru Shao, Delin Duan
Software Mentions: 1
Published: over 3 years ago

Projects: pypi: SUPPA

Papers Mentioning SUPPA 67