Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.12688/f1000research.8900.2
https://doi.org/10.12688/f1000research.8900.2
Cited by: 105
Author(s): Małgorzata Nowicka, Mark D. Robinson
Published: over 7 years ago
Software Mentions 14
bioconductor: BitSeq
Papers that mentioned: 28bioconductor: casper
Characterization of Alternative Splicing based on Paired-End ReadsPapers that mentioned: 4
bioconductor: DRIMSeq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seqPapers that mentioned: 17
bioconductor: MultiAssayExperiment
Software for the integration of multi-omics experiments in BioconductorPapers that mentioned: 16
bioconductor: SGSeq
Splice event prediction and quantification from RNA-seq dataPapers that mentioned: 14
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assaysPapers that mentioned: 3,071
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.Papers that mentioned: 307
pypi: SUPPA
A tool to study splicing across multiple conditions at high speed and accuracy.Papers that mentioned: 67