Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: casper
https://packages.ecosyste.ms/registries/bioconductor.org/packages/casper
Characterization of Alternative Splicing based on Paired-End Reads
1 version
Latest release: about 1 year ago
20,706 downloads total
Papers Mentioning casper 4
10.12688/f1000research.8900.2
DRIMSeq: a Dirichlet-multinomial framework for multivariate count outcomes in genomicsCited by: 105
Author(s): Małgorzata Nowicka, Mark D. Robinson
Software Mentions: 14
Published: almost 8 years ago
10.12688/f1000research.17082.2
Correction of gene model annotations improves isoform abundance estimates: the example of ketohexokinase (Khk)Cited by: 4
Author(s): Christophe D. Chabbert, Tanja Eberhart, Ilaria Guccini, Wilhelm Krek, Werner J. Kovacs
Software Mentions: 12
Published: over 5 years ago
10.1186/s13059-015-0862-3
Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usageCited by: 107
Author(s): Charlotte Soneson, Katarina L. Matthes, Małgorzata Nowicka, Charity W. Law, Mark D. Robinson
Software Mentions: 8
Published: almost 9 years ago
10.3389/fmicb.2021.637430
Nasopharyngeal Microbial Communities of Patients Infected With SARS-CoV-2 That Developed COVID-19Cited by: 50
Author(s): María Paz Ventero, Rafael R C Cuadrat, Inmaculada Vidal, Bruno de Bezerril Andrade, Carmen Molina-Pardines, Jose M. Haro‐Moreno, Felipe H. Coutinho, Esperanza Merino, L. C. A. Regitano, Cynthia B. Silveira, Haithem Afli, Mario López‐Pérez, Juan Carlos Rodrı́guez
Software Mentions: 3
Published: over 3 years ago