Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.12688/f1000research.17082.2
https://doi.org/10.12688/f1000research.17082.2
Cited by: 4
Author(s): Christophe D. Chabbert, Tanja Eberhart, Ilaria Guccini, Wilhelm Krek, Werner J. Kovacs
Published: about 5 years ago
Software Mentions 12
bioconductor: casper
Characterization of Alternative Splicing based on Paired-End ReadsPapers that mentioned: 4
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: DRIMSeq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seqPapers that mentioned: 17
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: Gviz
Plotting data and annotation information along genomic coordinatesPapers that mentioned: 134
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysisPapers that mentioned: 367
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of GraphicsPapers that mentioned: 11,441