Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-019-2947-6

https://doi.org/10.1186/s12859-019-2947-6

Yanagi: Fast and interpretable segment-based alternative splicing and gene expression analysis

Cited by: 3
Author(s): Mohamed K. Gunady, Stephen M. Mount, Héctor Corrada Bravo
Published: about 5 years ago

Software Mentions 5

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: DEXSeq

Inference of differential exon usage in RNA-Seq
Papers that mentioned: 226

bioconductor: edgeR

Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

pypi: SUPPA

A tool to study splicing across multiple conditions at high speed and accuracy.
Papers that mentioned: 67