Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-021-02261-x

https://doi.org/10.1186/s13059-021-02261-x

Cited by: 37
Author(s): Kie Kyon Huang, Jiawen Huang, Jeanie Wu, Ming‐Hui Lee, Su Ting Tay, Vikrant Kumar, R. Kalpana, Nisha Padmanabhan, Chong Xu, Angie Lay Keng Tan, Charlene Chan, Dennis Kappei, Jonathan Göke, Patrick Tan
Published: over 3 years ago

Software Mentions 8

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: proActiv

Estimate Promoter Activity from RNA-Seq data
Papers that mentioned: 1

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

cran: survminer

Drawing Survival Curves using 'ggplot2'
Papers that mentioned: 1,473

pypi: bwa

Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989

pypi: ioe

The Python Internet of Energy Library
Papers that mentioned: 3

pypi: MACS2

Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203

pypi: SUPPA

A tool to study splicing across multiple conditions at high speed and accuracy.
Papers that mentioned: 67