Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-021-02261-x

https://doi.org/10.1186/s13059-021-02261-x

Long-read transcriptome sequencing reveals abundant promoter diversity in distinct molecular subtypes of gastric cancer

Cited by: 37
Author(s): Kie Kyon Huang, Jiawen Huang, Jeanie Wu, Ming‐Hui Lee, Su Ting Tay, Vikrant Kumar, R. Kalpana, Nisha Padmanabhan, Chong Xu, Angie Lay Keng Tan, Charlene Chan, Dennis Kappei, Jonathan Göke, Patrick Tan
Published: almost 4 years ago

Software Mentions 8

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: proActiv
Estimate Promoter Activity from RNA-Seq data
Papers that mentioned: 1
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: survminer
Drawing Survival Curves using 'ggplot2'
Papers that mentioned: 1,473
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
pypi: ioe
The Python Internet of Energy Library
Papers that mentioned: 3
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: SUPPA
A tool to study splicing across multiple conditions at high speed and accuracy.
Papers that mentioned: 67