Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/bib/bbz126

https://doi.org/10.1093/bib/bbz126

Systematic evaluation of differential splicing tools for RNA-seq studies

Cited by: 99
Author(s): Arfa Mehmood, Asta Laiho, Mikko S Venäläinen, Aidan McGlinchey, Ning Wang, Laura L. Elo
Published: almost 5 years ago

Software Mentions 7

bioconductor: DEXSeq

Inference of differential exon usage in RNA-Seq
Papers that mentioned: 226

bioconductor: edgeR

Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

pypi: cufflinks

Productivity Tools for Plotly + Pandas
Papers that mentioned: 415

pypi: seqtk

seqtk provides various tools for Sequence.
Papers that mentioned: 213

pypi: SUPPA

A tool to study splicing across multiple conditions at high speed and accuracy.
Papers that mentioned: 67