Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12989-017-0239-8

https://doi.org/10.1186/s12989-017-0239-8

Maternal engineered nanomaterial inhalation during gestation alters the fetal transcriptome

Cited by: 36
Author(s): Phoebe A. Stapleton, Quincy A. Hathaway, C.E. Nichols, Alaeddin B. Abukabda, Mark V. Pinti, Danielle L. Shepherd, Carroll R. McBride, Jinghai Yi, Vincent Castranova, John M. Hollander, Timothy R. Nurkiewicz
Published: almost 7 years ago

Software Mentions 4

bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Papers that mentioned: 145
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: Gviz
Plotting data and annotation information along genomic coordinates
Papers that mentioned: 134
cran: PoiClaClu
Classification and Clustering of Sequencing Data Based on a Poisson Model
Papers that mentioned: 12