Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: unifrac

https://packages.ecosyste.ms/registries/pypi.org/packages/unifrac

High performance phylogenetic diversity calculations
3 versions
Latest release: about 3 years ago
8 downloads last month

Papers Mentioning unifrac 12

Citizen science charts two major “stomatotypes” in the oral microbiome of adolescents and reveals links with habits and drinking water composition
Cited by: 73
Author(s): Jesse R. Willis, Pedro González-Torres, Alexandros A. Pittis, Luis A. Bejarano, Luca Cozzuto, Núria Andreu, Miriam Alloza-Trabado, Antònia Valentín, Ewa Księżopolska, Harris Onywera, Magda Montfort, Antonio Hermoso, Susana Iraola-Guzmán, Ester Saus, Annick Labeeuw, Carlo Carolis, Jochen Hecht, Julia Ponomarenko, Toni Gabaldón
Software Mentions: 9
Published: almost 6 years ago

10.1002/ece3.574

Physical disturbance shapes vascular plant diversity more profoundly than fire in the sagebrush steppe of southeastern Idaho, U.S.A
Cited by: 14
Author(s): Matt Lavin, Tyler J. Brummer, Ryan Lane. Quire, Bruce D. Maxwell, Lisa J. Rew
Software Mentions: 5
Published: over 11 years ago

10.3389/fmicb.2015.01087

Metagenomic analysis of the rumen microbial community following inhibition of methane formation by a halogenated methane analog
Cited by: 81
Author(s): Stuart E. Denman, Gonzalo Martínez Fernández, Takumi Shinkai, Makoto Mitsumori, Christopher S. McSweeney
Software Mentions: 4
Published: about 9 years ago

10.1038/srep15839

Littoral lichens as a novel source of potentially bioactive Actinobacteria
Cited by: 51
Author(s): Delphine Parrot, Sanjay Antony-Babu, Laurent Intertaglia, Martín Grube, Sophie Tomasi, Marcelino T. Suzuki
Software Mentions: 3
Published: about 9 years ago

10.29219/fnr.v64.3672

Green tea leaf powder prevents dyslipidemia in high-fat diet-fed mice by modulating gut microbiota
Cited by: 26
Author(s): Jin Wang, Ping Li, Shuang Liu, Bowei Zhang, Yaozhong Hu, Hui Ma, Shuo Wang
Software Mentions: 2
Published: about 4 years ago

10.1111/j.1574-6941.2008.00611.x

Potential core species and satellite species in the bacterial community within the rabbit caecum
Cited by: 74
Author(s): Valérie Monteils, Laurent Cauquil, Sylvie Combes, Jean‐Jacques Godon, T. Gidenne
Software Mentions: 2
Published: almost 16 years ago

10.1186/1756-0500-7-830

A review of software for analyzing molecular sequences
Cited by: 45
Author(s): Haema Nilakanta, Kimberly L. Drews, Suzanne Firrell, Mary A. Foulkes, Kathleen A. Jablonski
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0232398

Factors affecting the microbiome of Ixodes scapularis and Amblyomma americanum
Cited by: 49
Author(s): R. Jory Brinkerhoff, Chris D. Clark, Kelly M. Ocasio, David T. Gauthier, Wayne L. Hynes
Software Mentions: 2
Published: over 4 years ago

10.1111/1751-7915.12162

Meta‐barcoded evaluation of the <scp>ISO</scp> standard 11063 <scp>DNA</scp> extraction procedure to characterize soil bacterial and fungal community diversity and composition
Cited by: 46
Author(s): Sébastien Terrat, Pierre Plassart, Emilie Bourgeois, Stéphanie Ferreira, Samuel Dequiedt, Nathalie Adele-Dit-De-Renseville, Philippe Lemanceau, Antonio Bispo, Abad Chabbi, Pierre‐Alain Maron, Lionel Ranjard
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0210157

Canine endometrial and vaginal microbiomes reveal distinct and complex ecosystems
Cited by: 38
Author(s): Candace Lyman, G. Reed Holyoak, Katrina R. Meinkoth, Xuwen Wieneke, K. A. Chillemi, Udaya DeSilva
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0230148

The fecal microbiota of healthy donor horses and geriatric recipients undergoing fecal microbial transplantation for the treatment of diarrhea
Cited by: 33
Author(s): Caroline A. McKinney, Bruno César Miranda Oliveira, Daniela Bedenice, Mary Rose Paradis, Melissa R. Mazan, Sophie Elena Sage, Alfredo Sánchez, Giovanni Widmer
Software Mentions: 1
Published: over 4 years ago

10.1186/s12859-015-0640-y

The unifrac significance test is sensitive to tree topology
Cited by: 18
Author(s): Catherine Lozupone, Rob Knight
Software Mentions: 1
Published: over 9 years ago