Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: DivE

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/DivE

Diversity Estimator
4 versions
Latest release: about 1 year ago
225 downloads last month

Papers Mentioning DivE 12

10.3389/fimmu.2018.00462

Analyzing Immunoglobulin Repertoires
Cited by: 77
Author(s): Neha Chaudhary, Duane R. Wesemann
Software Mentions: 8
Published: almost 7 years ago

Quantification of HTLV-1 Clonality and TCR Diversity
Cited by: 68
Author(s): Daniel J. Laydon, Anat Melamed, Aaron Sim, Nicolas Gillet, Kathleen Sim, Sam Darko, J. Simon Kroll, Daniel C. Douek, David A. Price, Charles R. M. Bangham, Becca Asquith
Software Mentions: 3
Published: over 10 years ago

10.1038/s42003-019-0342-5

Tasmanian devils with contagious cancer exhibit a constricted T-cell repertoire diversity
Cited by: 13
Author(s): Yuanyuan Cheng, Mariano Makara, Emma Peel, Samantha Fox, Anthony T. Papenfuss, Katherine Belov
Software Mentions: 2
Published: almost 6 years ago

10.3389/fimmu.2019.00899

The Pipeline Repertoire for Ig-Seq Analysis
Cited by: 32
Author(s): Laura López-Santibáñez-Jácome, S. Eréndira Avendaño‐Vázquez, C. Fabián Flores-Jasso
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2105-12-274

Detection of lineage-specific evolutionary changes among primate species
Cited by: 20
Author(s): Mihaela Pertea, Geo Pertea, Steven L. Salzberg
Software Mentions: 2
Published: over 13 years ago

10.1098/rstb.2014.0291

Estimating T-cell repertoire diversity: limitations of classical estimators and a new approach
Cited by: 161
Author(s): Daniel J Laydon, Charles R. M. Bangham, Becca Asquith
Software Mentions: 2
Published: over 9 years ago

10.1186/s12977-015-0221-1

HTLV-1 drives vigorous clonal expansion of infected CD8+ T cells in natural infection
Cited by: 27
Author(s): Anat Melamed, Daniel J. Laydon, Hebah A. Al-Khatib, Aileen Rowan, Graham P. Taylor, Charles R. M. Bangham
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.ppat.1003263

Strongyloidiasis and Infective Dermatitis Alter Human T Lymphotropic Virus-1 Clonality in vivo
Cited by: 50
Author(s): Nicolas Gillet, Lucy Cook, Daniel J. Laydon, Carol Hlela, Kristien Verdonck, Carolina Álvarez, Eduardo Gotuzzo, Daniel Clark, Lourdes Farré, Achiléa Candida Lisboa Bittencourt, Becca Asquith, Graham P. Taylor, Charles R. M. Bangham
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1004006

Clonality of HTLV-2 in Natural Infection
Cited by: 36
Author(s): Anat Melamed, Aviva Witkover, Daniel J. Laydon, Rachael Brown, Kristin Ladell, Kelly L. Miners, Aileen Rowan, Niall Gormley, David A. Price, Graham P. Taylor, Edward L. Murphy, Charles R. M. Bangham
Software Mentions: 1
Published: almost 11 years ago

10.1186/1742-4690-11-S1-O50

Estimation of clonal diversity in HTLV-1 infection
Cited by: 1
Author(s): Daniel J. Laydon, Anat Melamed, Aaron Sim, Nicolas Gillet, Kathleen Sim, Sam Darko, J. Simon Kroll, Daniel C. Douek, David A. Price, Charles R. M. Bangham, Becca Asquith
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12977-015-0236-7

Rapid dissemination of human T-lymphotropic virus type 1 during primary infection in transplant recipients
Cited by: 51
Author(s): Lucy Cook, Anat Melamed, Maria Piera Demontis, Daniel J. Laydon, James M. Fox, Jennifer Tosswill, Declan de Freitas, Ashley D. Price, James F. Medcalf, Fabiola Martin, James Neuberger, Charles R. M. Bangham, Graham P. Taylor
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pcbi.1007470

The relative contributions of infectious and mitotic spread to HTLV-1 persistence
Cited by: 20
Author(s): Daniel J Laydon, Vikram Sunkara, Lies Boelen, Charles R. M. Bangham, Becca Asquith
Software Mentions: 1
Published: over 4 years ago