Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: ashr

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ashr

Methods for Adaptive Shrinkage, using Empirical Bayes
8 versions
Latest release: over 1 year ago
8 dependent packages
4,859 downloads last month

Papers Mentioning ashr 12

10.12688/f1000research.20916.2

Fast effect size shrinkage software for beta-binomial models of allelic imbalance
Cited by: 11
Author(s): Joshua P. Zitovsky, Michael I. Love
Software Mentions: 9
Published: almost 4 years ago

Dynamic effects of genetic variation on gene expression revealed following hypoxic stress in cardiomyocytes
Cited by: 37
Author(s): Michelle C. Ward, Nicholas E. Banovich, Abhishek Sarkar, Matthew Stephens, Yoav Gilad
Software Mentions: 6
Published: almost 4 years ago

10.1186/s13059-019-1674-7

Topconfects: a package for confident effect sizes in differential expression analysis provides a more biologically useful ranked gene list
Cited by: 38
Author(s): Paul F. Harrison, Andrew Pattison, David Powell, Traude H. Beilharz
Software Mentions: 5
Published: over 5 years ago

10.1093/g3journal/jkaa055

Transcriptome analysis of <i>Caenorhabditis elegans</i> lacking heme peroxidase SKPO-1 reveals an altered response to <i>Enterococcus faecalis</i>
Cited by: 4
Author(s): Yi Liu, Daniel Martínez-Martínez, Clara L. Essmann, Melissa R. Cruz, Filipe Cabreiro, Danielle A. Garsin
Software Mentions: 5
Published: almost 4 years ago

10.3390/insects12030271

Differential Gene Expression in the Heads of Behaviorally Divergent Culex pipiens Mosquitoes
Cited by: 2
Author(s): Anna Noreuil, Megan L. Fritz
Software Mentions: 5
Published: over 3 years ago

10.1111/eva.12855

Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees
Cited by: 32
Author(s): Pascal Milesi, Mats Berlin, Jun Chen, Marion Orsucci, Lili Li, Gunnar Jansson, Bo Karlsson, Martin Lascoux
Software Mentions: 4
Published: over 5 years ago

10.1093/biostatistics/kxw041

False discovery rates: a new deal
Cited by: 474
Author(s): Matthew Stephens
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-021-85733-1

High-intensity leg cycling alters the molecular response to resistance exercise in the arm muscles
Cited by: 4
Author(s): Marcus Moberg, William Apró, Igor Červenka, Björn Ekblom, Gerrit van Hall, Hans-Christer Holmberg, Jorge L. Ruas, Eva Blomstrand
Software Mentions: 4
Published: over 3 years ago

10.21203/rs.3.rs-141578/v1

COVID-19 ARDS is characterized by a dysregulated host response that differs from cytokine storm and is modified by dexamethasone
Cited by: 14
Author(s): Aartik Sarma, Stephanie A. Christenson, Eran Mick, Thomas Deiss, Catherine DeVoe, Angela Oliveira Pisco, Rajani Ghale, Alejandra Jauregui, Ashley Byrne, Farzad Moazed, Natasha Spottiswoode, Pratik Sinha, Beth Shoshana Zha, Norma Neff, Michelle Tan, Paula Hayakawa Serpa, K. Mark Ansel, Jennifer G. Wilson, Aleksandra Leligdowicz, Emily Seigel, Marina Sirota, Joseph L. DeRisi, Michael A. Matthay, Carolyn M. Hendrickson, Kirsten N. Kangelaris, Matthew F. Krummel, Prescott G. Woodruff, David J. Erle, Carolyn S. Calfee, Charles Langelier
Software Mentions: 4
Published: almost 4 years ago

10.1186/s13059-021-02478-w

SUPERGNOVA: local genetic correlation analysis reveals heterogeneous etiologic sharing of complex traits
Cited by: 47
Author(s): Yiliang Zhang, Qiongshi Lu, Yixuan Ye, Kunling Huang, Wei Liu, Yuchang Wu, Xiaoyuan Zhong, Boyang Li, Zhaolong Yu, Brittany G. Travers, Donna M. Werling, James J. Li, Hongyu Zhao
Software Mentions: 2
Published: about 3 years ago

10.3389/fmicb.2019.02694

The Impact of Soil-Applied Biochars From Different Vegetal Feedstocks on Durum Wheat Plant Performance and Rhizospheric Bacterial Microbiota in Low Metal-Contaminated Soil
Cited by: 20
Author(s): Arianna Latini, Giovanni Bacci, Manuel Teodoro, Daniele Mirabile Gattia, Annamaria Bevivino, Lukáš Trakal
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2018.02844

Out in the Cold: Identification of Genomic Regions Associated With Cold Tolerance in the Biocontrol Fungus Clonostachys rosea Through Genome-Wide Association Mapping
Cited by: 18
Author(s): Martin Broberg, Mukesh Dubey, Man-Hong Sun, Katarina Ihrmark, Hans-Josef Schroers, Shidong Li, Dan Funck Jensen, Mikael Brandström Durling, Magnus Karlsson
Software Mentions: 1
Published: almost 6 years ago