Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-019-1674-7

https://doi.org/10.1186/s13059-019-1674-7

Topconfects: a package for confident effect sizes in differential expression analysis provides a more biologically useful ranked gene list

Cited by: 38
Author(s): Paul F. Harrison, Andrew Pattison, David Powell, Traude H. Beilharz
Published: over 5 years ago

Software Mentions 5

bioconductor: apeglm
Approximate posterior estimation for GLM coefficients
Papers that mentioned: 41
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
cran: ashr
Methods for Adaptive Shrinkage, using Empirical Bayes
Papers that mentioned: 12