Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: yml

https://packages.ecosyste.ms/registries/pypi.org/packages/yml

A fast, safe, pure Python YAML and JSON parser
1 version
Latest release: almost 8 years ago
1 dependent package
10,974 downloads last month

Papers Mentioning yml 12

DataPackageR: Reproducible data preprocessing, standardization and sharing using R/Bioconductor for collaborative data analysis
Cited by: 7
Author(s): Greg Finak, Bryan T. Mayer, William J. Fulp, Paul Obrecht, Alicia Sato, Eva Yin-han Chung, Drienna Holman, Raphaël Gottardo
Software Mentions: 19
Published: over 6 years ago

10.3389/fnins.2020.00919

HYGRIP: Full-Stack Characterization of Neurobehavioral Signals (fNIRS, EEG, EMG, Force, and Breathing) During a Bimanual Grip Force Control Task
Cited by: 10
Author(s): Pablo Ortega, Tong Zhao, A. Aldo Faisal
Software Mentions: 11
Published: about 4 years ago

10.1371/journal.pcbi.1008316

Ten simple rules for writing Dockerfiles for reproducible data science
Cited by: 36
Author(s): Daniel Nüst, Vanessa Sochat, Ben Marwick, Stephen J. Eglen, T. Head, Tony Hirst, Benjamin D. Evans
Software Mentions: 11
Published: about 4 years ago

10.1007/s10278-017-0037-8

SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research
Cited by: 239
Author(s): Ziv Yaniv, Bradley Lowekamp, Hans J. Johnson, Richard Beare
Software Mentions: 8
Published: almost 7 years ago

10.1093/bioinformatics/btv553

cl-dash: rapid configuration and deployment of Hadoop clusters for bioinformatics research in the cloud
Cited by: 9
Author(s): Paul Hodor, Amandeep Chawla, A Clark, Lauren Neal
Software Mentions: 5
Published: about 9 years ago

10.7554/eLife.49305

Evolution of C4 photosynthesis predicted by constraint-based modelling
Cited by: 42
Author(s): Mary Ann Blätke, Andrea Bräutigam
Software Mentions: 4
Published: almost 5 years ago

10.1534/genetics.119.302089

<i>beditor</i>: A Computational Workflow for Designing Libraries of Guide RNAs for CRISPR-Mediated Base Editing
Cited by: 32
Author(s): Rohan Dandage, Philippe Després, Nozomu Yachie, Christian R. Landry
Software Mentions: 4
Published: over 5 years ago

10.1038/s41597-020-00777-8

Multichannel acoustic source and image dataset for the cocktail party effect in hearing aid and implant users
Cited by: 4
Author(s): Tim Fischer, Marco Caversaccio, Wilhelm Wimmer
Software Mentions: 3
Published: almost 4 years ago

10.12688/wellcomeopenres.15853.2

PyOmeroUpload: A Python toolkit for uploading images and metadata to OMERO
Cited by: 5
Author(s): Johnny Hay, Eilidh Troup, Ivan B. N. Clark, Julian Pietsch, Tomasz Zieliński, Andrew J. Millar
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pcbi.1006343

PyPhi: A toolbox for integrated information theory
Cited by: 57
Author(s): William G. P. Mayner, William Marshall, Larissa Albantakis, Graham Findlay, Robert Marchman, Giulio Tononi
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-018-5334-1

Evolutionary, structural and functional analysis of the caleosin/peroxygenase gene family in the Fungi
Cited by: 10
Author(s): Farzana Rahman, Mehedi Hassan, Abdulsamie Hanano, David A. Fitzpatrick, Charley G. P. McCarthy, Denis J. Murphy
Software Mentions: 2
Published: almost 6 years ago

10.1186/s41469-020-00087-8

GitLab: work where you want, when you want
Cited by: 18
Author(s): Prithwiraj Choudhury, Kevin Crowston, Linus Dahlander, Marco Minervini, Sumita Raghuram
Software Mentions: 1
Published: about 4 years ago