Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: methylpy

https://packages.ecosyste.ms/registries/pypi.org/packages/methylpy

Bisulfite sequencing data processing and differential methylation analysis
50 versions
Latest release: over 1 year ago
98 downloads last month

Papers Mentioning methylpy 12

Regulatory remodeling in the allo-tetraploid frog Xenopus laevis
Cited by: 27
Author(s): Dei M. Elurbe, Sarita S. Paranjpe, Γεώργιος Γεωργίου, Ila van Kruijsbergen, Ozren Bogdanović, Romain Gibeaux, Rebecca Heald, Ryan Lister, Martijn A. Huynen, Simon J. van Heeringen, Gert Jan C. Veenstra
Software Mentions: 6
Published: about 7 years ago

10.1186/s12864-021-07466-9

Prenatal testosterone triggers long-term behavioral changes in male zebra finches: unravelling the neurogenomic mechanisms
Cited by: 6
Author(s): Alexandra B. Bentz, Chad E. Niederhuth, Laura L. Carruth, Kristen J. Navara
Software Mentions: 5
Published: over 3 years ago

10.1186/s13072-018-0246-5

Dnmt1 is essential for egg production and embryo viability in the large milkweed bug, Oncopeltus fasciatus
Cited by: 54
Author(s): Adam J. Bewick, Zachary Sanchez, Elizabeth C. McKinney, Allen J. Moore, Patricia J. Moore, Robert J. Schmitz
Software Mentions: 4
Published: almost 6 years ago

10.3390/ijms20215343

Discrimination of DNA Methylation Signal from Background Variation for Clinical Diagnostics
Cited by: 8
Author(s): Robersy Sánchez, Xiaodong Yang, Thomas A. Maher, Sally A. Mackenzie
Software Mentions: 4
Published: about 5 years ago

10.1186/s12864-020-6722-x

MethGET: web-based bioinformatics software for correlating genome-wide DNA methylation and gene expression
Cited by: 15
Author(s): Chin-Sheng Teng, Bing-Heng Wu, Ming‐Ren Yen, Pao‐Yang Chen
Software Mentions: 4
Published: over 4 years ago

10.1186/s13059-020-02163-4

Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis
Cited by: 55
Author(s): Ranjith Papareddy, Katalin Páldi, Subramanian Paulraj, Ping Kao, Stefan Lutzmayer, Michael D. Nodine
Software Mentions: 4
Published: about 4 years ago

10.7554/eLife.47835

Epigenetic silencing of a multifunctional plant stress regulator
Cited by: 25
Author(s): Mark Zander, Björn C. Willige, Yiping He, Thu Anh Nguyen, Amber E. Langford, Ramlah Nehring, Elizabeth D. Howell, Robert B. McGrath, Anna Bartlett, Rosa Castanon, Joseph R. Nery, Huaming Chen, Zhuzhu Zhang, Florian Jupe, Anna N. Stepanova, Robert J. Schmitz, Mathew G. Lewsey, Joanne Chory, Joseph R. Ecker
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-017-1251-x

Dynamic DNA methylation reconfiguration during seed development and germination
Cited by: 187
Author(s): Taiji Kawakatsu, Joseph R. Nery, Rosa Castanon, Joseph R. Ecker
Software Mentions: 3
Published: about 7 years ago

10.1534/g3.119.400365

Evolutionary and Experimental Loss of Gene Body Methylation and Its Consequence to Gene Expression
Cited by: 38
Author(s): Adam J. Bewick, Yinwen Zhang, Jered M. Wendte, Xiaoyu Zhang, Robert J. Schmitz
Software Mentions: 3
Published: over 5 years ago

10.1186/s13059-017-1288-x

Stable inheritance of DNA methylation allows creation of epigenotype maps and the study of epiallele inheritance patterns in the absence of genetic variation
Cited by: 101
Author(s): Brigitte T. Hofmeister, Kevin Lee, Nicholas A. Rohr, David W. Hall, Robert J. Schmitz
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0179821

Epigenomic diversification within the genus Lupinus
Cited by: 8
Author(s): Karolina Susek, Agnieszka Brąszewska-Zalewska, Adam J. Bewick, Robert Hasterok, Robert J. Schmitz, B. Naganowska
Software Mentions: 1
Published: over 7 years ago

10.1186/s13059-017-1195-1

The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants
Cited by: 113
Author(s): Adam J. Bewick, Chad E. Niederhuth, Lexiang Ji, Nicholas A. Rohr, Patrick Griffin, James H. Leebens‐Mack, Robert J. Schmitz
Software Mentions: 1
Published: over 7 years ago