Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-017-1335-7

https://doi.org/10.1186/s13059-017-1335-7

Regulatory remodeling in the allo-tetraploid frog Xenopus laevis

Cited by: 27
Author(s): Dei M. Elurbe, Sarita S. Paranjpe, Γεώργιος Γεωργίου, Ila van Kruijsbergen, Ozren Bogdanović, Romain Gibeaux, Rebecca Heald, Ryan Lister, Martijn A. Huynen, Simon J. van Heeringen, Gert Jan C. Veenstra
Published: about 7 years ago

Software Mentions 6

bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browser
Papers that mentioned: 107
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: fluff
Extra tools for PyLint
Papers that mentioned: 10
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
pypi: methylpy
Bisulfite sequencing data processing and differential methylation analysis
Papers that mentioned: 12