Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: GeneCycle
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/GeneCycle
Identification of Periodically Expressed Genes
11 versions
Latest release: almost 4 years ago
1 dependent package
362 downloads last month
Papers Mentioning GeneCycle 12
10.1038/s41598-017-06110-5
High resolution temporal transcriptomics of mouse embryoid body development reveals complex expression dynamics of coding and noncoding lociCited by: 10
Author(s): Brian Gloss, Bethany Signal, Seth W. Cheetham, Franziska Gruhl, Dominik C. Kaczorowski, Andrew C. Perkins, Marcel E. Dinger
Software Mentions: 10
Published: over 7 years ago
10.1371/journal.pcbi.1007666
Methods detecting rhythmic gene expression are biologically relevant only for strong signalCited by: 22
Author(s): David Laloum, Marc Robinson‐Rechavi
Software Mentions: 8
Published: almost 5 years ago
10.3390/e22101071
Assessing Granger-Causality in the Southern Humboldt Current Ecosystem Using Cross-Spectral MethodsCited by: 8
Author(s): Javier E. Contreras-Reyes, Carola Hernández‐Santoro
Software Mentions: 7
Published: over 4 years ago
10.1186/s12859-016-1440-8
TTCA: an R package for the identification of differentially expressed genes in time course microarray dataCited by: 15
Author(s): Marco Albrecht, Damian Stichel, Bettina Müller, Ruth Merkle, Carsten Sticht, Norbert Gretz, Ursula Klingmüller, Kai Breuhahn, Franziska Matthäus
Software Mentions: 5
Published: almost 8 years ago
10.3389/fcell.2014.00040
Quantifying periodicity in omics dataCited by: 7
Author(s): Cornelia Amariei, Masaru Tomita, Douglas B. Murray
Software Mentions: 5
Published: over 10 years ago
10.1371/journal.pone.0143412
Transcriptome Analysis of Plant Hormone-Related Tomato (Solanum lycopersicum) Genes in a Sunlight-Type Plant FactoryCited by: 10
Author(s): Yusuke Tanigaki, Takanobu Higashi, Kotaro Takayama, Atsushi J. Nagano, Mie N. Honjo, Hirokazu Fukuda
Software Mentions: 4
Published: about 9 years ago
10.1186/1752-0509-3-93
Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycleCited by: 11
Author(s): Pierre R. Bushel, Nicholas A. Heard, Roee Gutman, Liwen Liu, Shyamal D. Peddada, Saumyadipta Pyne
Software Mentions: 4
Published: over 15 years ago
10.1371/journal.pone.0146643
Human Gut Bacteria Are Sensitive to Melatonin and Express Endogenous Circadian RhythmicityCited by: 159
Author(s): Jiffin K. Paulose, John M. Wright, Akruti Patel, Vincent M. Cassone
Software Mentions: 3
Published: almost 9 years ago
10.1371/journal.pone.0136851
Ability to Generate Patient-Derived Breast Cancer Xenografts Is Enhanced in Chemoresistant Disease and Predicts Poor Patient OutcomesCited by: 52
Author(s): Priscilla F. McAuliffe, Kurt W. Evans, Argun Akçakanat, Ken Chen, Xiaofeng Zheng, Hao Zhao, Agda Karina Eterovic, Takafumi Sangai, Ashley M. Holder, Chandeshwar Sharma, Huiqin Chen, Kim Anh, Emily Tarco, Mihai Gagea, Katherine A. Naff, Ayşegül Şahin, Asha S. Multani, Dalliah M. Black, Elizabeth A. Mittendorf, Isabelle Bedrosian, Gordon B. Mills, Ana M. González-Angulo, Funda Meric‐Bernstam
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pone.0053085
The Transcriptional and Gene Regulatory Network of Lactococcus lactis MG1363 during Growth in MilkCited by: 23
Author(s): Anne de Jong, Morten Ejby, Oscar P. Kuipers, Mogens Kilstrup, Jan Kok
Software Mentions: 3
Published: almost 12 years ago
10.1186/s12870-014-0308-1
Clock genes and diurnal transcriptome dynamics in summer and winter in the gymnosperm Japanese cedar (Cryptomeria japonica(L.f.) D.Don)Cited by: 17
Author(s): Masato Nose, Atsushi Watanabe
Software Mentions: 1
Published: about 10 years ago
10.1186/1471-2229-10-109
Does the core circadian clock in the moss Physcomitrella patens (Bryophyta) comprise a single loop?Cited by: 66
Author(s): Karl Holm, Thomas Källman, Niclas Gyllenstrand, Harald Hedman, Ulf Lagercrantz
Software Mentions: 1
Published: over 14 years ago