Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: GeneCycle

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/GeneCycle

Identification of Periodically Expressed Genes
11 versions
Latest release: almost 4 years ago
1 dependent package
362 downloads last month

Papers Mentioning GeneCycle 12

10.1038/s41598-017-06110-5

High resolution temporal transcriptomics of mouse embryoid body development reveals complex expression dynamics of coding and noncoding loci
Cited by: 10
Author(s): Brian Gloss, Bethany Signal, Seth W. Cheetham, Franziska Gruhl, Dominik C. Kaczorowski, Andrew C. Perkins, Marcel E. Dinger
Software Mentions: 10
Published: over 7 years ago

10.1371/journal.pcbi.1007666

Methods detecting rhythmic gene expression are biologically relevant only for strong signal
Cited by: 22
Author(s): David Laloum, Marc Robinson‐Rechavi
Software Mentions: 8
Published: over 4 years ago

10.3390/e22101071

Assessing Granger-Causality in the Southern Humboldt Current Ecosystem Using Cross-Spectral Methods
Cited by: 8
Author(s): Javier E. Contreras-Reyes, Carola Hernández‐Santoro
Software Mentions: 7
Published: about 4 years ago

10.1186/s12859-016-1440-8

TTCA: an R package for the identification of differentially expressed genes in time course microarray data
Cited by: 15
Author(s): Marco Albrecht, Damian Stichel, Bettina Müller, Ruth Merkle, Carsten Sticht, Norbert Gretz, Ursula Klingmüller, Kai Breuhahn, Franziska Matthäus
Software Mentions: 5
Published: almost 8 years ago

10.3389/fcell.2014.00040

Quantifying periodicity in omics data
Cited by: 7
Author(s): Cornelia Amariei, Masaru Tomita, Douglas B. Murray
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0143412

Transcriptome Analysis of Plant Hormone-Related Tomato (Solanum lycopersicum) Genes in a Sunlight-Type Plant Factory
Cited by: 10
Author(s): Yusuke Tanigaki, Takanobu Higashi, Kotaro Takayama, Atsushi J. Nagano, Mie N. Honjo, Hirokazu Fukuda
Software Mentions: 4
Published: almost 9 years ago

10.1186/1752-0509-3-93

Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle
Cited by: 11
Author(s): Pierre R. Bushel, Nicholas A. Heard, Roee Gutman, Liwen Liu, Shyamal D. Peddada, Saumyadipta Pyne
Software Mentions: 4
Published: about 15 years ago

10.1371/journal.pone.0146643

Human Gut Bacteria Are Sensitive to Melatonin and Express Endogenous Circadian Rhythmicity
Cited by: 159
Author(s): Jiffin K. Paulose, John M. Wright, Akruti Patel, Vincent M. Cassone
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0136851

Ability to Generate Patient-Derived Breast Cancer Xenografts Is Enhanced in Chemoresistant Disease and Predicts Poor Patient Outcomes
Cited by: 52
Author(s): Priscilla F. McAuliffe, Kurt W. Evans, Argun Akçakanat, Ken Chen, Xiaofeng Zheng, Hao Zhao, Agda Karina Eterovic, Takafumi Sangai, Ashley M. Holder, Chandeshwar Sharma, Huiqin Chen, Kim Anh, Emily Tarco, Mihai Gagea, Katherine A. Naff, Ayşegül Şahin, Asha S. Multani, Dalliah M. Black, Elizabeth A. Mittendorf, Isabelle Bedrosian, Gordon B. Mills, Ana M. González-Angulo, Funda Meric‐Bernstam
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0053085

The Transcriptional and Gene Regulatory Network of Lactococcus lactis MG1363 during Growth in Milk
Cited by: 23
Author(s): Anne de Jong, Morten Ejby, Oscar P. Kuipers, Mogens Kilstrup, Jan Kok
Software Mentions: 3
Published: almost 12 years ago

10.1186/s12870-014-0308-1

Clock genes and diurnal transcriptome dynamics in summer and winter in the gymnosperm Japanese cedar (Cryptomeria japonica(L.f.) D.Don)
Cited by: 17
Author(s): Masato Nose, Atsushi Watanabe
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2229-10-109

Does the core circadian clock in the moss Physcomitrella patens (Bryophyta) comprise a single loop?
Cited by: 66
Author(s): Karl Holm, Thomas Källman, Niclas Gyllenstrand, Harald Hedman, Ulf Lagercrantz
Software Mentions: 1
Published: over 14 years ago