Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: bigsnpr

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/bigsnpr

Analysis of Massive SNP Arrays
15 versions
Latest release: over 1 year ago
3 dependent packages
1,004 downloads last month

Papers Mentioning bigsnpr 12

A fast and scalable framework for large-scale and ultrahigh-dimensional sparse regression with application to the UK Biobank
Cited by: 68
Author(s): Junyang Qian, Yosuke Tanigawa, Wenfei Du, Matthew Aguirre, Chris Chang, Robert Tibshirani, Manuel A. Rivas, Trevor Hastie
Software Mentions: 12
Published: about 4 years ago

10.1371/journal.pgen.1009398

MOSTWAS: Multi-Omic Strategies for Transcriptome-Wide Association Studies
Cited by: 37
Author(s): Arjun Bhattacharya, Yun Li, Michael I. Love
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pgen.1009697

A fast and robust Bayesian nonparametric method for prediction of complex traits using summary statistics
Cited by: 27
Author(s): Geyu Zhou, Hongyu Zhao
Software Mentions: 5
Published: over 3 years ago

10.1093/bioinformatics/btaa1029

LDpred2: better, faster, stronger
Cited by: 212
Author(s): Florian Privé, Julyan Arbel, Bjarni J. Vilhjálmsson
Software Mentions: 4
Published: almost 4 years ago

10.1534/g3.119.400088

The Effect of Neutral Recombination Variation on Genome Scans for Selection
Cited by: 54
Author(s): Katie E. Lotterhos
Software Mentions: 4
Published: over 5 years ago

10.1093/bioinformatics/btaa520

Efficient toolkit implementing best practices for principal component analysis of population genetic data
Cited by: 66
Author(s): Florian Privé, Keurcien Luu, Michaël G. B. Blum, John J. McGrath, Bjarni J. Vilhjálmsson
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0218306

Consequences of PCA graphs, SNP codings, and PCA variants for elucidating population structure
Cited by: 22
Author(s): Hugh G. Gauch, Sheng Qian, Hans‐Peter Piepho, Linda Zhou, Rui Chen
Software Mentions: 3
Published: over 5 years ago

10.1534/genetics.119.302019

Efficient Implementation of Penalized Regression for Genetic Risk Prediction
Cited by: 49
Author(s): Florian Privé, Hugues Aschard, Michaël G. B. Blum
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1008773

Scalable probabilistic PCA for large-scale genetic variation data
Cited by: 27
Author(s): Aman Agrawal, Alec Chiu, Minh Quan Lê, Eran Halperin, Sriram Sankararaman
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-99031-3

Controlling for background genetic effects using polygenic scores improves the power of genome-wide association studies
Cited by: 3
Author(s): Declan Bennett, Donal F. O’Shea, John Ferguson, Derek W. Morris, Cathal Seoighe
Software Mentions: 1
Published: about 3 years ago

10.1038/s41437-018-0168-9

Genetic diversity and population divergences of an indigenous tree (Coffea mauritiana) in Reunion Island: role of climatic and geographical factors
Cited by: 22
Author(s): Edith Garot, Thierry Joët, Marie‐Christine Combes, Philippe Lebailly
Software Mentions: 1
Published: almost 6 years ago