Projects: cran: bigsnpr
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/bigsnpr
Analysis of Massive SNP Arrays
15 versions
Latest release: over 2 years ago
3 dependent packages
1,004 downloads last month
Enhanced Analysis
Repository Activity:
Repository Owner:
Florian Privé (user)
Senior Researcher (2022-) • Postdoc (2019-2021) • PhD student (2016-2019) in predictive human genetics • ENSIMAG (2013-2016) Academic
Senior Researcher (2022-) • Postdoc (2019-2021) • PhD student (2016-2019) in predictive human genetics • ENSIMAG (2013-2016) Academic
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Academic repository owner
Repository owned by academic institution -
+16
Science terms in README
8 scientific terms found in README -
+20
DOI references
2 DOI references found in README
Penalties:
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-15
No science keywords
No scientific terms found in keywords/classifiers
Very Likely Science (100)
Papers Mentioning bigsnpr 12
10.1371/journal.pgen.1009141
A fast and scalable framework for large-scale and ultrahigh-dimensional sparse regression with application to the UK BiobankCited by: 68
Author(s): Junyang Qian, Yosuke Tanigawa, Wenfei Du, Matthew Aguirre, Chris Chang, Robert Tibshirani, Manuel A. Rivas, Trevor Hastie
Software Mentions: 12
Published: almost 5 years ago
10.1371/journal.pgen.1009398
MOSTWAS: Multi-Omic Strategies for Transcriptome-Wide Association StudiesCited by: 37
Author(s): Arjun Bhattacharya, Yun Li, Michael I. Love
Software Mentions: 6
Published: over 4 years ago
10.1371/journal.pgen.1009697
A fast and robust Bayesian nonparametric method for prediction of complex traits using summary statisticsCited by: 27
Author(s): Geyu Zhou, Hongyu Zhao
Software Mentions: 5
Published: about 4 years ago
10.1093/bioinformatics/btaa1029
LDpred2: better, faster, strongerCited by: 212
Author(s): Florian Privé, Julyan Arbel, Bjarni J. Vilhjálmsson
Software Mentions: 4
Published: over 4 years ago
10.1534/g3.119.400088
The Effect of Neutral Recombination Variation on Genome Scans for SelectionCited by: 54
Author(s): Katie E. Lotterhos
Software Mentions: 4
Published: about 6 years ago
10.1093/bioinformatics/btaa520
Efficient toolkit implementing best practices for principal component analysis of population genetic dataCited by: 66
Author(s): Florian Privé, Keurcien Luu, Michaël G. B. Blum, John J. McGrath, Bjarni J. Vilhjálmsson
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0218306
Consequences of PCA graphs, SNP codings, and PCA variants for elucidating population structureCited by: 22
Author(s): Hugh G. Gauch, Sheng Qian, Hans‐Peter Piepho, Linda Zhou, Rui Chen
Software Mentions: 3
Published: about 6 years ago
10.1534/genetics.119.302019
Efficient Implementation of Penalized Regression for Genetic Risk PredictionCited by: 49
Author(s): Florian Privé, Hugues Aschard, Michaël G. B. Blum
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pgen.1008773
Scalable probabilistic PCA for large-scale genetic variation dataCited by: 27
Author(s): Aman Agrawal, Alec Chiu, Minh Quan Lê, Eran Halperin, Sriram Sankararaman
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-021-99031-3
Controlling for background genetic effects using polygenic scores improves the power of genome-wide association studiesCited by: 3
Author(s): Declan Bennett, Donal F. O’Shea, John Ferguson, Derek W. Morris, Cathal Seoighe
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41437-018-0168-9
Genetic diversity and population divergences of an indigenous tree (Coffea mauritiana) in Reunion Island: role of climatic and geographical factorsCited by: 22
Author(s): Edith Garot, Thierry Joët, Marie‐Christine Combes, Philippe Lebailly
Software Mentions: 1
Published: over 6 years ago