Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: mmvec
https://packages.ecosyste.ms/registries/pypi.org/packages/mmvec
Microbe-metabolite interactions through neural networks
9 versions
Latest release: about 4 years ago
61 downloads last month
Papers Mentioning mmvec 12
10.1371/journal.pcbi.1009021
MiMeNet: Exploring microbiome-metabolome relationships using neural networksCited by: 33
Author(s): Derek Reiman, Brian T. Layden, Yang Dai
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2020.595910
A Comparative Evaluation of Tools to Predict Metabolite Profiles From Microbiome Sequencing DataCited by: 17
Author(s): Xiaochen Yin, Tomer Altman, Erica Rutherford, Kiana West, Yonggan Wu, Jinlyung Choi, Paul L. Beck, Gilaad G. Kaplan, Karim Dabbagh, Todd Z. DeSantis, Shoko Iwai
Software Mentions: 4
Published: almost 4 years ago
10.1128/mSystems.00340-20
Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of AntibioticCited by: 5
Author(s): Alison Vrbanac, Kathryn A. Patras, Alan K. Jarmusch, Robert H. Mills, Samuel R. Shing, Robert A. Quinn, Fernando Vargas, Kyung E. Rhee, Pieter C. Dorrestein, Rob Knight, Victor Nizet
Software Mentions: 4
Published: about 4 years ago
10.1128/mSystems.00116-21
Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and MetabolomeCited by: 25
Author(s): Celeste Allaband, Amulya Lingaraju, Cameron Martino, Baylee J. Russell, Anupriya Tripathi, Orit Poulsen, Ana Carolina Dantas Machado, Dan Zhou, Jin Xue, Emmanuel O. Elijah, Atul Malhotra, Pieter C. Dorrestein, Rob Knight, Gabriel G. Haddad, Amir Zarrinpar
Software Mentions: 4
Published: over 3 years ago
10.1186/s12876-020-01444-3
In search for interplay between stool microRNAs, microbiota and short chain fatty acids in Crohn’s disease - a preliminary studyCited by: 10
Author(s): Filip Ambrożkiewicz, Jakub Karczmarski, Maria Kulecka, Agnieszka Paziewska, Magdalena Niemira, Natalia Żeber‐Lubecka, Edyta Zagórowicz, Adam Krętowski, Jerzy Ostrowski
Software Mentions: 3
Published: about 4 years ago
10.3390/metabo10060243
Machine Learning Applications for Mass Spectrometry-Based MetabolomicsCited by: 143
Author(s): Ulf W. Liebal, Anh N. Phan, Malvika Sudhakar, Karthik Raman, Lars M. Blank
Software Mentions: 3
Published: over 4 years ago
10.1128/mSystems.00876-19
Initial Mapping of the New York City Wastewater ViromeCited by: 24
Author(s): Kristen M. Gulino, Jahan Rahman, Michelle Badri, James T. Morton, Richard Bonneau, Elodie Ghedin
Software Mentions: 3
Published: over 4 years ago
10.1128/mSystems.00452-20
Microbe-Metabolite Associations Linked to the Rebounding Murine Gut Microbiome Postcolonization with Vancomycin-Resistant Enterococcus faeciumCited by: 2
Author(s): Andre Mu, Glen P. Carter, Lucy Li, Nicole Isles, Alison Vrbanac, James T. Morton, Alan K. Jarmusch, David P. De Souza, Vinod K. Narayana, Komal Kanojia, Brunda Nijagal, Malcolm J. McConville, Rob Knight, Benjamin P Howden, Timothy P. Stinear
Software Mentions: 3
Published: about 4 years ago
10.3389/fpls.2021.621276
Linking Plant Secondary Metabolites and Plant Microbiomes: A ReviewCited by: 215
Author(s): Zhiqiang Pang, Jia Chen, Tuhong Wang, Chunsheng Gao, Zhimin Li, Long Guo, Jianping Xu, Yi Cheng
Software Mentions: 2
Published: over 3 years ago
10.1093/cdn/nzab027
Effect of Bovine Milk Fat Globule Membrane and Lactoferrin in Infant Formula on Gut Microbiome and Metabolome at 4 Months of AgeCited by: 8
Author(s): Maciej Chichlowski, Nicholas A. Bokulich, Cheryl L. Harris, Jennifer L. Wampler, Fĕi Li, Carol Lynn Berseth, Colin D. Rudolph, Steven S. Wu
Software Mentions: 2
Published: over 3 years ago
10.1128/mSystems.00901-19
Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and MetabolomeCited by: 68
Author(s): Bryn C. Taylor, Franck Lejzerowicz, Marion Poirel, Justin P. Shaffer, Lingjing Jiang, Alexander A. Aksenov, Nicole S. Litwin, Gregory Humphrey, Cameron Martino, Sandrine Miller‐Montgomery, Pieter C. Dorrestein, Patrick Veiga, Se Jin Song, Daniel McDonald, Muriel Derrien, Rob Knight
Software Mentions: 2
Published: over 4 years ago
10.1128/mSystems.00841-21
Metabolomics in Functional Interrogation of Individual Holobiont MembersCited by: 6
Author(s): Neha Garg
Software Mentions: 1
Published: about 3 years ago