Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fmicb.2020.595910

https://doi.org/10.3389/fmicb.2020.595910

A Comparative Evaluation of Tools to Predict Metabolite Profiles From Microbiome Sequencing Data

Cited by: 17
Author(s): Xiaochen Yin, Tomer Altman, Erica Rutherford, Kiana West, Yonggan Wu, Jinlyung Choi, Paul L. Beck, Gilaad G. Kaplan, Karim Dabbagh, Todd Z. DeSantis, Shoko Iwai
Published: almost 4 years ago

Software Mentions 4

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: MIMOSA

Mixture Models for Single-Cell Assays
Papers that mentioned: 29

pypi: mmvec

Microbe-metabolite interactions through neural networks
Papers that mentioned: 12

pypi: MUSiCC

MUSICC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome.
Papers that mentioned: 19