Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: rmsd
https://packages.ecosyste.ms/registries/pypi.org/packages/rmsd
Calculate root-mean-square deviation (RMSD) between two sets of cartesian coordinates (XYZ or PDB format), using rotation (fx. Kabsch algorithm), atom reordering (fx. Hungarian algorithm), and axis reflections, resulting in the minimal RMSD.
9 versions
Latest release: almost 2 years ago
8 dependent packages
25,253 downloads last month
Papers Mentioning rmsd 12
10.1371/journal.pone.0153680
Viral Evolved Inhibition Mechanism of the RNA Dependent Protein Kinase PKR's Kinase Domain, a Structural PerspectiveCited by: 4
Author(s): K. Hari Krishna, Yallamandayya Vadlamudi, Mithilesh Kumar
Software Mentions: 9
Published: over 8 years ago
10.1038/s41598-020-61132-w
Long-range replica exchange molecular dynamics guided drug repurposing against tyrosine kinase PtkA of Mycobacterium tuberculosisCited by: 10
Author(s): Priya Nagpal, Salma Jamal, Hina Singh, Waseem Ali, Sana Tanweer, Rahul Sharma, Abhinav Grover, Sonam Grover
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-020-70202-y
Identification and characterization of cytosolic malate dehydrogenase from the liver fluke Fasciola giganticaCited by: 6
Author(s): Purna B Chetri, Rohit Shukla, Timir Tripathi
Software Mentions: 3
Published: about 4 years ago
10.6026/97320630013339
A QSAR model of Olanzapine derivatives as potential inhibitors for 5-HT2A ReceptorCited by: 3
Author(s): Pooja Mitra, Aishwarya Rastogi, Mayank Rajpoot, Ajay Kumar, Vivek Srivastava
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-021-93266-w
An immunoinformatics approach to design a multi-epitope vaccine against Mycobacterium tuberculosis exploiting secreted exosome proteinsCited by: 14
Author(s): Rahul Sharma, Vikrant Singh Rajput, Salma Jamal, Abhinav Grover, Sonam Grover
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0061908
p.Arg82Leu von Hippel-Lindau (VHL) Gene Mutation among Three Members of a Family with Familial Bilateral Pheochromocytoma in India: Molecular Analysis and In Silico CharacterizationCited by: 9
Author(s): Anulekha Mary John, George Priya Doss C, Andrew Ebenazer, M. S. Seshadri, Aravindan Nair, Simon Rajaratnam, Rekha Pai
Software Mentions: 2
Published: over 11 years ago
10.3390/ijms18030482
L1198F Mutation Resensitizes Crizotinib to ALK by Altering the Conformation of Inhibitor and ATP Binding SitesCited by: 17
Author(s): Jian Li, Rong Sun, Yuehong Wu, Mingxin Song, Jia Li, Qianye Yang, Xiaoyi Chen, Ji Bao, Qi Zhao
Software Mentions: 1
Published: over 7 years ago
10.6026/97320630013256
Marine sponge derived natural products as inhibitors of mycothiol-S-conjugate amidaseCited by: 1
Author(s): Akansha Saxena, S. K. Mishra
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pntd.0002188
Sulfated Polysaccharide, Curdlan Sulfate, Efficiently Prevents Entry/Fusion and Restricts Antibody-Dependent Enhancement of Dengue Virus Infection In Vitro: A Possible Candidate for Clinical ApplicationCited by: 60
Author(s): Koji Ichiyama, Sindhoora Bhargavi Gopala Reddy, Li Feng Zhang, Wei-Xin Chin, Tegshi Muschin, Lars Heinig, Youichi Suzuki, Nanjundappa Haraprasad, Yoshiyuki Yoshinaka, Akihide Ryo, Nobuo Nomura, Eng Eong Ooi, Subhash G. Vasudevan, Takashi Yoshida, Naoki Yamamoto
Software Mentions: 1
Published: over 11 years ago
10.1186/s13321-017-0227-x
Efficient conformational sampling and weak scoring in docking programs? Strategy of the wisdom of crowdsCited by: 41
Author(s): Ludovic Chaput, Liliane Mouawad
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.ppat.1006553
Destabilizing polymorphism in cervid prion protein hydrophobic core determines prion conformation and conversion efficiencyCited by: 28
Author(s): Samia Hannaoui, Sara Amidian, Yo Ching Cheng, Camilo Duque Velásquez, Lyudmyla Dorosh, Sampson Law, Glenn C. Telling, Maria Stepanova, Debbie McKenzie, Holger Wille, Sabine Gilch
Software Mentions: 1
Published: about 7 years ago
10.1186/s12868-018-0472-6
Biaryl scaffold-focused virtual screening for anti-aggregatory and neuroprotective effects in Alzheimer’s diseaseCited by: 19
Author(s): Sidra Khalid, Maryam Zahid, Hussain Ali, Yeong S. Kim, Salman Khan
Software Mentions: 1
Published: almost 6 years ago