Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: ImmuneDB
https://packages.ecosyste.ms/registries/pypi.org/packages/ImmuneDB
A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
29 versions
Latest release: over 3 years ago
57 downloads last month
Papers Mentioning ImmuneDB 13
10.7150/thno.61390
The methods and advances of adaptive immune receptors repertoire sequencingCited by: 17
Author(s): Hongmei Li, Wenjing Pan, Cheng Tang, Yujie Tang, Haijing Wu, Akihiko Yoshimura, Yan Deng, Nongyue He, Li Song
Software Mentions: 4
Published: almost 4 years ago
10.3389/fdata.2020.00022
The ADC API: A Web API for the Programmatic Query of the AIRR Data CommonsCited by: 22
Author(s): Scott Christley, Ademar Aguiar, George Blanck, Felix Breden, Syed Ahmad Chan Bukhari, Christian E. Busse, Jerome Jaglale, Srilakshmy L. Harikrishnan, Uri Laserson, Bjoern Peters, Artur Rocha, Chaim A. Schramm, Sarah E. Taylor, Jason A. Vander Heiden, Bojan Zimonja, Corey T. Watson, Brian Corrie, Lindsay G. Cowell
Software Mentions: 4
Published: over 4 years ago
10.3389/fimmu.2018.02107
ImmuneDB, a Novel Tool for the Analysis, Storage, and Dissemination of Immune Repertoire Sequencing DataCited by: 46
Author(s): Aaron M. Rosenfeld, Wenzhao Meng, Eline T. Luning Prak, Uri Hershberg
Software Mentions: 4
Published: about 6 years ago
10.1186/s13073-021-00918-7
Maintenance of the human memory T cell repertoire by subset and tissue siteCited by: 28
Author(s): Michelle Miron, Wenzhao Meng, Aaron M. Rosenfeld, Shirit Dvorkin, Maya M.L. Poon, Nora Lam, Brahma V. Kumar, Yoram Louzoun, Eline T. Luning Prak, Donna L. Farber
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pntd.0008870
Alteration in the Culex pipiens transcriptome reveals diverse mechanisms of the mosquito immune system implicated upon Rift Valley fever phlebovirus exposureCited by: 3
Author(s): Ana Isabel Núñez, Anna Esteve‐Codina, Jèssica Gómez‐Garrido, Marco Brustolin, Sandra Talavera, Miguel Berdugo, Marc Dabad, Tyler Alioto, Albert Bensaïd, Núria Busquets
Software Mentions: 3
Published: almost 4 years ago
10.3389/fimmu.2018.00976
VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and RearrangementsCited by: 56
Author(s): Scott Christley, Walter Scarborough, Eddie Salinas, William Rounds, Inimary T. Toby, John Fonner, Mikhail K. Levin, Min Kim, Stephen Mock, Christopher Jordan, Jared Ostmeyer, Adam Buntzman, Florian Rubelt, Marco L. Davila, Nancy Monson, Richard H. Scheuermann, Lindsay G. Cowell
Software Mentions: 2
Published: over 6 years ago
10.3389/fimmu.2019.00899
The Pipeline Repertoire for Ig-Seq AnalysisCited by: 32
Author(s): Laura López-Santibáñez-Jácome, S. Eréndira Avendaño‐Vázquez, C. Fabián Flores-Jasso
Software Mentions: 2
Published: over 5 years ago
10.1126/sciimmunol.abi6950
Distinct antibody and memory B cell responses in SARS-CoV-2 naïve and recovered individuals after mRNA vaccinationCited by: 504
Author(s): Rishi R. Goel, Sokratis A. Apostolidis, Mark M. Painter, Divij Mathew, Ajinkya Pattekar, Oliva Kuthuru, Sigrid Gouma, Philip Hicks, Wenzhao Meng, Aaron M. Rosenfeld, Sarah Dysinger, Kendall A. Lundgreen, Leticia Kuri-Cervantes, Sharon Adamski, Amanda Hicks, Scott Korte, Derek A. Oldridge, Amy E. Baxter, Josephine R. Giles, Madison E. Weirick, Christopher M. McAllister, Jeanette Dougherty, Sherea Long, Kurt D’Andrea, Jacob T. Hamilton, Michael R. Betts, Eline T. Luning Prak, Paul Bates, Scott E. Hensley, Allison R. Greenplate, E. John Wherry
Software Mentions: 2
Published: over 3 years ago
10.3389/fimmu.2018.00118
Next-Generation Sequencing of Antibody Display RepertoiresCited by: 65
Author(s): Romain Rouet, Katherine Jackson, D.B. Langley, Daniel Christ
Software Mentions: 1
Published: almost 7 years ago
10.3389/fimmu.2018.02206
AIRR Community Standardized Representations for Annotated Immune RepertoiresCited by: 55
Author(s): Jason A. Vander Heiden, Susanna Marquez, Nishanth Marthandan, Syed Bukhari, Christian E. Busse, Brian Corrie, Uri Hershberg, Steven H. Kleinstein, F. A. Matsen, D. Ralph, Aaron M. Rosenfeld, Chaim A. Schramm, Scott Christley, Uri Laserson
Software Mentions: 1
Published: about 6 years ago
10.1172/jci.insight.147386
IgV somatic mutation of human anti–SARS-CoV-2 monoclonal antibodies governs neutralization and breadth of reactivityCited by: 11
Author(s): Mayara Garcia de Mattos Barbosa, Hui Liu, Danny Huynh, Greg Shelley, Evan T. Keller, Brian T. Emmer, Emily Sherman, David Ginsburg, Andrew Kennedy, Andrew W. Tai, Christiane E. Wobus, Carmen Mirabeli, Thomas M. Lanigan, Milagros Samaniego, Wenzhao Meng, Aaron M. Rosenfeld, Eline T. Luning Prak, Jeffrey L. Platt, Marília Cascalho
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pcbi.1006388
Predicting B cell receptor substitution profiles using public repertoire dataCited by: 9
Author(s): Amrit Dhar, Kristian Davidsen, F. A. Matsen, Vladimir N. Minin
Software Mentions: 1
Published: about 6 years ago
10.3389/fimmu.2018.01472
Computational Evaluation of B-Cell Clone Sizes in Bulk PopulationsCited by: 32
Author(s): Aaron M. Rosenfeld, Wenzhao Meng, Dora Y Chen, Bochao Zhang, Tomer Granot, Donna L. Farber, Uri Hershberg, Eline T. Luning Prak
Software Mentions: 1
Published: over 6 years ago