Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: ImmuneDB

https://packages.ecosyste.ms/registries/pypi.org/packages/ImmuneDB

A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
29 versions
Latest release: over 3 years ago
57 downloads last month

Papers Mentioning ImmuneDB 13

The methods and advances of adaptive immune receptors repertoire sequencing
Cited by: 17
Author(s): Hongmei Li, Wenjing Pan, Cheng Tang, Yujie Tang, Haijing Wu, Akihiko Yoshimura, Yan Deng, Nongyue He, Li Song
Software Mentions: 4
Published: over 3 years ago

10.3389/fdata.2020.00022

The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons
Cited by: 22
Author(s): Scott Christley, Ademar Aguiar, George Blanck, Felix Breden, Syed Ahmad Chan Bukhari, Christian E. Busse, Jerome Jaglale, Srilakshmy L. Harikrishnan, Uri Laserson, Bjoern Peters, Artur Rocha, Chaim A. Schramm, Sarah E. Taylor, Jason A. Vander Heiden, Bojan Zimonja, Corey T. Watson, Brian Corrie, Lindsay G. Cowell
Software Mentions: 4
Published: over 4 years ago

10.3389/fimmu.2018.02107

ImmuneDB, a Novel Tool for the Analysis, Storage, and Dissemination of Immune Repertoire Sequencing Data
Cited by: 46
Author(s): Aaron M. Rosenfeld, Wenzhao Meng, Eline T. Luning Prak, Uri Hershberg
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13073-021-00918-7

Maintenance of the human memory T cell repertoire by subset and tissue site
Cited by: 28
Author(s): Michelle Miron, Wenzhao Meng, Aaron M. Rosenfeld, Shirit Dvorkin, Maya M.L. Poon, Nora Lam, Brahma V. Kumar, Yoram Louzoun, Eline T. Luning Prak, Donna L. Farber
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pntd.0008870

Alteration in the Culex pipiens transcriptome reveals diverse mechanisms of the mosquito immune system implicated upon Rift Valley fever phlebovirus exposure
Cited by: 3
Author(s): Ana Isabel Núñez, Anna Esteve‐Codina, Jèssica Gómez‐Garrido, Marco Brustolin, Sandra Talavera, Miguel Berdugo, Marc Dabad, Tyler Alioto, Albert Bensaïd, Núria Busquets
Software Mentions: 3
Published: almost 4 years ago

10.3389/fimmu.2018.00976

VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements
Cited by: 56
Author(s): Scott Christley, Walter Scarborough, Eddie Salinas, William Rounds, Inimary T. Toby, John Fonner, Mikhail K. Levin, Min Kim, Stephen Mock, Christopher Jordan, Jared Ostmeyer, Adam Buntzman, Florian Rubelt, Marco L. Davila, Nancy Monson, Richard H. Scheuermann, Lindsay G. Cowell
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2019.00899

The Pipeline Repertoire for Ig-Seq Analysis
Cited by: 32
Author(s): Laura López-Santibáñez-Jácome, S. Eréndira Avendaño‐Vázquez, C. Fabián Flores-Jasso
Software Mentions: 2
Published: over 5 years ago

10.1126/sciimmunol.abi6950

Distinct antibody and memory B cell responses in SARS-CoV-2 naïve and recovered individuals after mRNA vaccination
Cited by: 504
Author(s): Rishi R. Goel, Sokratis A. Apostolidis, Mark M. Painter, Divij Mathew, Ajinkya Pattekar, Oliva Kuthuru, Sigrid Gouma, Philip Hicks, Wenzhao Meng, Aaron M. Rosenfeld, Sarah Dysinger, Kendall A. Lundgreen, Leticia Kuri-Cervantes, Sharon Adamski, Amanda Hicks, Scott Korte, Derek A. Oldridge, Amy E. Baxter, Josephine R. Giles, Madison E. Weirick, Christopher M. McAllister, Jeanette Dougherty, Sherea Long, Kurt D’Andrea, Jacob T. Hamilton, Michael R. Betts, Eline T. Luning Prak, Paul Bates, Scott E. Hensley, Allison R. Greenplate, E. John Wherry
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2018.00118

Next-Generation Sequencing of Antibody Display Repertoires
Cited by: 65
Author(s): Romain Rouet, Katherine Jackson, D.B. Langley, Daniel Christ
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2018.02206

AIRR Community Standardized Representations for Annotated Immune Repertoires
Cited by: 55
Author(s): Jason A. Vander Heiden, Susanna Marquez, Nishanth Marthandan, Syed Bukhari, Christian E. Busse, Brian Corrie, Uri Hershberg, Steven H. Kleinstein, F. A. Matsen, D. Ralph, Aaron M. Rosenfeld, Chaim A. Schramm, Scott Christley, Uri Laserson
Software Mentions: 1
Published: almost 6 years ago

10.1172/jci.insight.147386

IgV somatic mutation of human anti–SARS-CoV-2 monoclonal antibodies governs neutralization and breadth of reactivity
Cited by: 11
Author(s): Mayara Garcia de Mattos Barbosa, Hui Liu, Danny Huynh, Greg Shelley, Evan T. Keller, Brian T. Emmer, Emily Sherman, David Ginsburg, Andrew Kennedy, Andrew W. Tai, Christiane E. Wobus, Carmen Mirabeli, Thomas M. Lanigan, Milagros Samaniego, Wenzhao Meng, Aaron M. Rosenfeld, Eline T. Luning Prak, Jeffrey L. Platt, Marília Cascalho
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1006388

Predicting B cell receptor substitution profiles using public repertoire data
Cited by: 9
Author(s): Amrit Dhar, Kristian Davidsen, F. A. Matsen, Vladimir N. Minin
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2018.01472

Computational Evaluation of B-Cell Clone Sizes in Bulk Populations
Cited by: 32
Author(s): Aaron M. Rosenfeld, Wenzhao Meng, Dora Y Chen, Bochao Zhang, Tomer Granot, Donna L. Farber, Uri Hershberg, Eline T. Luning Prak
Software Mentions: 1
Published: about 6 years ago