Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: ESEA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ESEA

Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis
1 version
Latest release: almost 10 years ago
0 downloads

Papers Mentioning ESEA 12

IP4M: an integrated platform for mass spectrometry-based metabolomics data mining
Cited by: 32
Author(s): Dandan Liang, Quan Liu, Kejun Zhou, Jia Wang, Guoxiang Xie, Tianlu Chen
Software Mentions: 11
Published: about 4 years ago

10.1186/s12864-019-6155-6

A framework using topological pathways for deeper analysis of transcriptome data
Cited by: 0
Author(s): Yue Zhao, Stephanie Piekos, Tham H. Hoang, Dong-Guk Shin
Software Mentions: 7
Published: over 4 years ago

10.3389/fgene.2021.647653

DysPIA: A Novel Dysregulated Pathway Identification Analysis Method
Cited by: 1
Author(s): Limei Wang, Weixin Xie, Kongning Li, Zhenzhen Wang, Xia Li, Weixing Feng, Li Jin
Software Mentions: 6
Published: over 3 years ago

10.1038/srep13044

ESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis
Cited by: 24
Author(s): Junwei Han, Xinrui Shi, Yunpeng Zhang, Yanjun Xu, Ying Jiang, Chunlong Zhang, Feng Li, Haixiu Yang, Desi Shang, Zeguo Sun, Fei Su, Chunquan Li, Xia Li
Software Mentions: 5
Published: over 9 years ago

10.1038/srep40450

Altered Pathway Analyzer: A gene expression dataset analysis tool for identification and prioritization of differentially regulated and network rewired pathways
Cited by: 12
Author(s): Abhinav Kaushik, Shakir Ali, Dinesh Gupta
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0173331

Bayesian model of signal rewiring reveals mechanisms of gene dysregulation in acquired drug resistance in breast cancer
Cited by: 12
Author(s): A. K. M. Azad, Alfons Lawen, Jonathan M. Keith
Software Mentions: 3
Published: over 7 years ago

10.1186/s12885-018-5061-7

Metabolic control of PPAR activity by aldehyde dehydrogenase regulates invasive cell behavior and predicts survival in hepatocellular and renal clear cell carcinoma
Cited by: 18
Author(s): Diāna Andrējeva, Jan-Michael Kugler, Thanh Hung Nguyen, Anders Malmendal, Magnus Holm, Birgitte Groenkaer Toft, Anand C Loya, Stephen M. Cohen
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12918-017-0400-x

Rewiring of the inferred protein interactome during blood development studied with the tool PPICompare
Cited by: 5
Author(s): Thorsten Will, Volkhard Helms
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pcbi.0020094

Complex Parameter Landscape for a Complex Neuron Model
Cited by: 236
Author(s): Pablo Achard, Erik De Schutter
Software Mentions: 2
Published: over 18 years ago

10.7554/eLife.08714

Genomic epidemiology of artemisinin resistant malaria
Cited by: 220
Author(s): Roberto Amato, Olivo Miotto, Charles J. Woodrow, Jacob Almagro-Garcia, Ipsita Sinha, Susana Campino, Daniel Mead, Eleanor Drury, Mihir Kekre, Mandy Sanders, Alfred Amambua-Ngwa, Chanaki Amaratunga, Lucas Amenga-Etego, Voahangy Andrianaranjaka, Tobias O. Apinjoh, Elizabeth A. Ashley, Sarah Auburn, Gordon A. Awandare, Vito Baraka, Alyssa E. Barry, Maciej F. Boni, Steffen Borrmann, Teun Bousema, OraLee H. Branch, Peter C. Bull, Kesinee Chotivanich, David J. Conway, Alister G. Craig, Nicholas P. J. Day, AA Djimde, Christiane Dolecek, Arjen M. Dondorp, Chris Drakeley, Patrick E. Duffy
Software Mentions: 2
Published: over 8 years ago

10.3390/jintelligence7040024

Intelligence and the Individuals with Disabilities Education Act
Cited by: 4
Author(s): Tomoe Kanaya
Software Mentions: 1
Published: about 5 years ago

10.3389/fpsyg.2016.01438

Differences in Learning Strategies, Goal Orientations, and Self-Concept between Overachieving, Normal-Achieving, and Underachieving Secondary Students
Cited by: 14
Author(s): Juan Luís Castejón Costa, Raquel Gilar, Alejandro Veas, Pablo Miñano
Software Mentions: 1
Published: about 8 years ago