Packages with Software Mentions in Scientific Papers

pypi: likert

Tools to analyze Likert scale data
Papers that mentioned: 13

pypi: QIP

Quantum Computing Library
Papers that mentioned: 13

cran: TTR

Technical Trading Rules
Papers that mentioned: 13

cran: comparison

Multivariate Likelihood Ratio Calculation and Evaluation
Papers that mentioned: 13

cran: EValue

Sensitivity Analyses for Unmeasured Confounding and Other Biases in Observational Studies and Meta-Analyses
Papers that mentioned: 13

bioconductor: PathNet

An R package for pathway analysis using topological information
Papers that mentioned: 13

pypi: mimics

Small tool for deferring actions and operations on objects and classes
Papers that mentioned: 13

cran: EMMLi

A Maximum Likelihood Approach to the Analysis of Modularity
Papers that mentioned: 13

pypi: leaflet

Dead simple I2P SAM library
Papers that mentioned: 13

pypi: drawtree

Draw binary tree in plain text
Papers that mentioned: 13

pypi: FINE

Framework for integrated energy systems assessment
Papers that mentioned: 13

bioconductor: Chicago

CHiCAGO: Capture Hi-C Analysis of Genomic Organization
Papers that mentioned: 13

cran: likert

Analysis and Visualization Likert Items
Papers that mentioned: 13

pypi: web2py

full-stack framework for rapid development and prototyping of secure database-driven web-based applications, written and programmable in Python.
Papers that mentioned: 13

cran: leaflet

Create Interactive Web Maps with the JavaScript 'Leaflet' Library
Papers that mentioned: 13

cran: SpatialPack

Tools for Assessment the Association Between Two Spatial Processes
Papers that mentioned: 13

cran: SpadeR

Species-Richness Prediction and Diversity Estimation with R
Papers that mentioned: 13

cran: polysat

Tools for Polyploid Microsatellite Analysis
Papers that mentioned: 13

pypi: Orange3

Orange, a component-based data mining framework.
Papers that mentioned: 13

cran: SIRE

Finding Feedback Effects in SEM and Testing for Their Significance
Papers that mentioned: 13

cran: eggCounts

Hierarchical Modelling of Faecal Egg Counts
Papers that mentioned: 13

A mid stack Flask based framework that put structure in the file system. Features: Caching, Mailing, Storage, CSRF, recaptcha, Cors. Supports HTML, Markdown and Jade and more
Papers that mentioned: 13

pypi: graphmap

Images on a quad graph. Create an infinite canvas
Papers that mentioned: 13

pypi: changepoint

A Bayesian change point library
Papers that mentioned: 13

pypi: pcap

packet capture library
Papers that mentioned: 13

cran: kml

K-Means for Longitudinal Data
Papers that mentioned: 13

pypi: expresso

A symbolic expression manipulation library.
Papers that mentioned: 13

pypi: gemma

simple data mapping tools
Papers that mentioned: 13

cran: emdbook

Support Functions and Data for "Ecological Models and Data"
Papers that mentioned: 13

pypi: Jupiter

Useful J-related stuff.
Papers that mentioned: 13

cran: questionr

Functions to Make Surveys Processing Easier
Papers that mentioned: 13

pypi: popgen

Synthetic Population Generator 2.0
Papers that mentioned: 13

bioconductor: miRNApath

miRNApath: Pathway Enrichment for miRNA Expression Data
Papers that mentioned: 13

pypi: dp

Automatically transform recursive functions to dynamic programming
Papers that mentioned: 13

bioconductor: affycomp

Graphics Toolbox for Assessment of Affymetrix Expression Measures
Papers that mentioned: 13

cran: NetworkComparisonTest

Statistical Comparison of Two Networks Based on Several Invariance Measures
Papers that mentioned: 13

cran: smacof

Multidimensional Scaling
Papers that mentioned: 13

pypi: metaMS

Data processing, and annotation for metabolomics analysis by low-resolution GC-MS
Papers that mentioned: 13

cran: JMI

Jackknife Mutual Information
Papers that mentioned: 13

cran: gsDesign

Group Sequential Design
Papers that mentioned: 13

pypi: MRS

MRS analysis software
Papers that mentioned: 13

bioconductor: iSEE

Interactive SummarizedExperiment Explorer
Papers that mentioned: 13

pypi: c3d

A library for manipulating C3D binary files
Papers that mentioned: 13

bioconductor: metaMS

MS-based metabolomics annotation pipeline
Papers that mentioned: 13

cran: sensitivity

Global Sensitivity Analysis of Model Outputs
Papers that mentioned: 13

cran: DTComPair

Comparison of Binary Diagnostic Tests in a Paired Study Design
Papers that mentioned: 13

pypi: Bambino

Bambino
Papers that mentioned: 13

pypi: mlxtend

Machine Learning Library Extensions
Papers that mentioned: 13

pypi: proc

Simple interface to Linux process information
Papers that mentioned: 13

cran: R.utils

Various Programming Utilities
Papers that mentioned: 13

pypi: UPnP

Forward a Port with UPnP and pure Python script
Papers that mentioned: 13

pypi: Arrays

Python library for storing and reading stored arrays.
Papers that mentioned: 13

bioconductor: Mergeomics

Integrative network analysis of omics data
Papers that mentioned: 13

pypi: v

v makes building projects easier. It's as simple as that.
Papers that mentioned: 13

bioconductor: ggcyto

Visualize Cytometry data with ggplot
Papers that mentioned: 13

pypi: StochPy

StochPy (Stochastic modeling in Python) provides several stochastic simulation algorithms to simulate (bio)chemical systems of reactions in a stochastic manner.
Papers that mentioned: 13

cran: IntCal

Radiocarbon Calibration Curves
Papers that mentioned: 13

pypi: SLIP

SLIP: a Simple Library for Image Processing
Papers that mentioned: 13

pypi: cuda

Papers that mentioned: 13

pypi: simulate

HuggingFace community-driven open-source library of simulation environments
Papers that mentioned: 13

pypi: OMM

Object Model Mapper for Python-based web apps and/or APIs
Papers that mentioned: 13

pypi: pingouin

Pingouin: statistical package for Python
Papers that mentioned: 13

pypi: DBN

Decentralized Bluetooth Network
Papers that mentioned: 13

cran: IFP

Identifying Functional Polymorphisms
Papers that mentioned: 13

cran: SHELF

Tools to Support the Sheffield Elicitation Framework
Papers that mentioned: 13

cran: MRS

Multi-Resolution Scanning for Cross-Sample Differences
Papers that mentioned: 13

cran: omics

'–omics' Data Analysis Toolbox
Papers that mentioned: 13

cran: changepoint

Methods for Changepoint Detection
Papers that mentioned: 13

bioconductor: affxparser

Affymetrix File Parsing SDK
Papers that mentioned: 13

cran: yarrr

A Companion to the e-Book "YaRrr!: The Pirate's Guide to R"
Papers that mentioned: 13

pypi: DecisionTree

A Python module for decision-tree based classification of multidimensional data
Papers that mentioned: 13

cran: clusterRepro

Reproducibility of Gene Expression Clusters
Papers that mentioned: 13

cran: ClassDiscovery

Classes and Methods for "Class Discovery" with Microarrays or Proteomics
Papers that mentioned: 13

cran: CHNOSZ

Thermodynamic Calculations and Diagrams for Geochemistry
Papers that mentioned: 13

pypi: metagen

Metadata.xml Generator for Ebuilds
Papers that mentioned: 13

pypi: smart

Smart Package Manager is a next generation package handling tool
Papers that mentioned: 13

pypi: rast

Rast
Papers that mentioned: 13

cran: apaTables

Create American Psychological Association (APA) Style Tables
Papers that mentioned: 13

cran: BSL

Bayesian Synthetic Likelihood
Papers that mentioned: 13

cran: BPM

Bayesian Purity Model to Estimate Tumor Purity
Papers that mentioned: 13

bioconductor: EWCE

Expression Weighted Celltype Enrichment
Papers that mentioned: 13

pypi: spline

(s)hell oriented (p)ipe(line) tool for ci/cd
Papers that mentioned: 13

cran: AGD

Analysis of Growth Data
Papers that mentioned: 13

bioconductor: motifbreakR

A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites
Papers that mentioned: 13

cran: babel

Ribosome Profiling Data Analysis
Papers that mentioned: 13

pypi: omics

omics: A Python package for omics data analysis.
Papers that mentioned: 13

pypi: analytics

Library for efficiently adding analytics to your project.
Papers that mentioned: 13

cran: gmt

Interface Between GMT Map-Making Software and R
Papers that mentioned: 13

cran: generalhoslem

Goodness of Fit Tests for Logistic Regression Models
Papers that mentioned: 13

cran: MCSim

Determine the Optimal Number of Clusters
Papers that mentioned: 13

cran: ada

The R Package Ada for Stochastic Boosting
Papers that mentioned: 13

bioconductor: GARS

GARS: Genetic Algorithm for the identification of Robust Subsets of variables in high-dimensional and challenging datasets
Papers that mentioned: 13

cran: MAVE

Methods for Dimension Reduction
Papers that mentioned: 13

pypi: cobweb

A scaffold for building and deploying powerful and robust webapps
Papers that mentioned: 13

cran: MaxentVariableSelection

Selecting the Best Set of Relevant Environmental Variables along with the Optimal Regularization Multiplier for Maxent Niche Modeling
Papers that mentioned: 13

pypi: clust

Optimised consensus clustering of multiple heterogeneous datasets
Papers that mentioned: 13

cran: MAPA

Multiple Aggregation Prediction Algorithm
Papers that mentioned: 13

pypi: cron

cron
Papers that mentioned: 13

pypi: kernel

UNKNOWN
Papers that mentioned: 13

pypi: ESN

Multiple Layer ESN
Papers that mentioned: 13