Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: Mergeomics

https://packages.ecosyste.ms/registries/bioconductor.org/packages/Mergeomics

Integrative network analysis of omics data
1 version
Latest release: about 1 year ago
10,072 downloads total

Papers Mentioning Mergeomics 13

10.3389/fonc.2020.00423

Computational Oncology in the Multi-Omics Era: State of the Art
Cited by: 55
Author(s): Guillermo de Anda-Jáuregui, Enrique Hernández‐Lemus
Software Mentions: 46
Published: over 4 years ago

Tissue-specific pathways and networks underlying sexual dimorphism in non-alcoholic fatty liver disease
Cited by: 55
Author(s): Zeyneb Kurt, Rio Barrere‐Cain, Jonnby LaGuardia, Margarete Mehrabian, Calvin Pan, Simon T. Hui, Frode Norheim, Zhiqiang Zhou, Yehudit Hasin, Aldons J. Lusis, Xia Yang
Software Mentions: 5
Published: about 6 years ago

10.1186/s12918-018-0671-x

Multi-omics integration reveals molecular networks and regulators of psoriasis
Cited by: 35
Author(s): Yuqi Zhao, Deepali Jhamb, Le Shu, Douglas Arneson, Deepak K. Rajpal, Xia Yang
Software Mentions: 5
Published: almost 6 years ago

10.3390/genes10120966

Network Modeling Approaches and Applications to Unravelling Non-Alcoholic Fatty Liver Disease
Cited by: 26
Author(s): Montgomery Blencowe, Tilan Karunanayake, Julian Wier, Neil Hsu, Xia Yang
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-016-3198-9

Mergeomics: multidimensional data integration to identify pathogenic perturbations to biological systems
Cited by: 81
Author(s): Le Shu, Yuqi Zhao, Zeyneb Kurt, Sean G. Byars, Taru Tukiainen, Johannes Kettunen, Luz D. Orozco, Matteo Pellegrini, Aldons J. Lusis, Samuli Ripatti, Bin Zhang, Michael Inouye, Ville Mäkinen, Xia Yang
Software Mentions: 3
Published: about 8 years ago

10.3389/fcvm.2019.00021

Integrative Genomics Analysis Unravels Tissue-Specific Pathways, Networks, and Key Regulators of Blood Pressure Regulation
Cited by: 12
Author(s): Yuqi Zhao, Montgomery Blencowe, Xingyi Shi, Le Shu, Candace Levian, In Sook Ahn, Stuart K. Kim, Tianxiao Huan, Daniel Levy, Xia Yang
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.00844

Circulating Cell-Free Nucleic Acids as Epigenetic Biomarkers in Precision Medicine
Cited by: 29
Author(s): Beenish Rahat, Taqveema Ali, Divika Sapehia, Aatish Mahajan, Jyotdeep Kaur
Software Mentions: 2
Published: over 4 years ago

10.3390/jcm9051278

Sexual Dimorphism of NAFLD in Adults. Focus on Clinical Aspects and Implications for Practice and Translational Research
Cited by: 76
Author(s): Amedeo Lonardo, Ayako Suzuki
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-016-3057-8

Mergeomics: a web server for identifying pathological pathways, networks, and key regulators via multidimensional data integration
Cited by: 45
Author(s): Douglas Arneson, Anindya Bhattacharya, Le Shu, Ville Mäkinen, Xia Yang
Software Mentions: 1
Published: about 8 years ago

10.3390/biom11091379

Molecular Biology Networks and Key Gene Regulators for Inflammatory Biomarkers Shared by Breast Cancer Development: Multi-Omics Systems Analysis
Cited by: 2
Author(s): Su Yon Jung, Jeanette C. Papp, Matteo Pellegrini, Herbert Yu, Eric M. Sobel
Software Mentions: 1
Published: about 3 years ago

10.3390/biom11030406

Multi-Omics Data Analysis Uncovers Molecular Networks and Gene Regulators for Metabolic Biomarkers
Cited by: 1
Author(s): Su Yon Jung
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pgen.1007040

Shared genetic regulatory networks for cardiovascular disease and type 2 diabetes in multiple populations of diverse ethnicities in the United States
Cited by: 71
Author(s): Le Shu, Kei Hang Katie Chan, Guanglin Zhang, Tianxiao Huan, Zeyneb Kurt, Yuqi Zhao, Veronica Codoni, David‐Alexandre Trégouët, Jun Yang, James G. Wilson, Xi Luo, Daniel Levy, Aldons J. Lusis, Simin Liu, Xia Yang
Software Mentions: 1
Published: about 7 years ago

10.1186/s12872-019-01271-9

Integrative genomic analysis identified common regulatory networks underlying the correlation between coronary artery disease and plasma lipid levels
Cited by: 8
Author(s): Liuying Chen, Yinghao Yao, Changchun Jin, Shen Wu, Qiang Liu, Jingjing Li, Yunlong Ma, Yizhou Xu, Yigang Zhong
Software Mentions: 1
Published: almost 5 years ago