Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

pypi: regress
Python bindings to Rust's regress ECMA regular expressions library
Papers that mentioned: 15
pypi: ALM
ALM Model in Python
Papers that mentioned: 15
cran: DTK
Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes
Papers that mentioned: 15
cran: drgee
Doubly Robust Generalized Estimating Equations
Papers that mentioned: 15
bioconductor: SCnorm
Normalization of single cell RNA-seq data
Papers that mentioned: 15
cran: reldist
Relative Distribution Methods
Papers that mentioned: 15
pypi: PLEASE
Software for the analysis of Low Energy Electron Microscopy data
Papers that mentioned: 15
pypi: a
Python Distribution Utilities
Papers that mentioned: 15
pypi: ariba
ARIBA: Antibiotic Resistance Identification By Assembly
Papers that mentioned: 15
pypi: MetaLab
MetaLab
Papers that mentioned: 15
cran: blandr
Bland-Altman Method Comparison
Papers that mentioned: 15
cran: metap
Meta-Analysis of Significance Values
Papers that mentioned: 15
pypi: 16

Papers that mentioned: 15
cran: metaMA
Meta-Analysis for MicroArrays
Papers that mentioned: 15
pypi: skygrid
The SkyGrid Python SDK
Papers that mentioned: 15
pypi: scape
a framework for raspberry pi developing
Papers that mentioned: 15
pypi: gtable
A fast table-like container for data analytics
Papers that mentioned: 15
pypi: odyssey
A Multi-SCM Multi-Repository Workspace Management Framework
Papers that mentioned: 15
cran: mcr
Method Comparison Regression
Papers that mentioned: 15
bioconductor: PhenStat
Statistical analysis of phenotypic data
Papers that mentioned: 15
cran: csv
Read and Write CSV Files with Selected Conventions
Papers that mentioned: 15
pypi: SloppyCell

Papers that mentioned: 15
cran: CRM
Continual Reassessment Method (CRM) for Phase I Clinical Trials
Papers that mentioned: 15
cran: LinkageMapView
Plot Linkage Group Maps with Quantitative Trait Loci
Papers that mentioned: 15
cran: imager
Image Processing Library Based on 'CImg'
Papers that mentioned: 15
cran: COSINE
COndition SpecIfic sub-NEtwork
Papers that mentioned: 15
pypi: IGC

Papers that mentioned: 15
cran: QuACN
Quantitative Analysis of Complex Networks
Papers that mentioned: 15
cran: rEDM
Empirical Dynamic Modeling ('EDM')
Papers that mentioned: 15
pypi: fastaq
fastAQ is a very and super lightweight package for working with FASTA/FASTQ sequences
Papers that mentioned: 15
bioconductor: bioDist
Different distance measures
Papers that mentioned: 15
cran: ellipse
Functions for Drawing Ellipses and Ellipse-Like Confidence Regions
Papers that mentioned: 15
cran: pop
A Flexible Syntax for Population Dynamic Modelling
Papers that mentioned: 15
cran: Hotelling
Hotelling's T^2 Test and Variants
Papers that mentioned: 15
cran: EEM
Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data
Papers that mentioned: 15
cran: shinyBS
Twitter Bootstrap Components for Shiny
Papers that mentioned: 15
pypi: svm
Version manager for Apache Spark
Papers that mentioned: 15
cran: gtable
Arrange 'Grobs' in Tables
Papers that mentioned: 15
cran: scape
Statistical Catch-at-Age Plotting Environment
Papers that mentioned: 15
cran: CGP
Composite Gaussian Process Models
Papers that mentioned: 15
bioconductor: VariantTools
Tools for Exploratory Analysis of Variant Calls
Papers that mentioned: 15
pypi: purr
Data reduction logging tool, Useful for remembering reductions
Papers that mentioned: 15
pypi: nstruct
Define complicate C/C++ structs in Python to parse/pack them from/to raw bytes
Papers that mentioned: 15
cran: PrevMap
Geostatistical Modelling of Spatially Referenced Prevalence Data
Papers that mentioned: 15
pypi: Therapy
Toy blog software using Haus on CouchDB.
Papers that mentioned: 15
cran: LOGICOIL
multi-state prediction of coiled-coil oligomeric state
Papers that mentioned: 15
pypi: pantomime
MIME type normalisation and labels.
Papers that mentioned: 15
pypi: mcr

Papers that mentioned: 15
pypi: box
Papers that mentioned: 15
pypi: GEMA
A library to build and study Self-Organizing-Maps
Papers that mentioned: 15
pypi: quantity
Unit-safe computations with quantities (including money)
Papers that mentioned: 15
cran: GISTools
Some further GIS capabilities for R
Papers that mentioned: 15
cran: optparse
Command Line Option Parser
Papers that mentioned: 15
bioconductor: sigPathway
Pathway Analysis
Papers that mentioned: 15
pypi: PyWavelets
PyWavelets, wavelet transform module
Papers that mentioned: 15
cran: olsrr
Tools for Building OLS Regression Models
Papers that mentioned: 15
bioconductor: flowDensity
Sequential Flow Cytometry Data Gating
Papers that mentioned: 15
cran: NST
Normalized Stochasticity Ratio
Papers that mentioned: 15
bioconductor: flowWorkspace
Infrastructure for representing and interacting with gated and ungated cytometry data sets.
Papers that mentioned: 15
pypi: piano
CMS built using Pyramid and MongoDB
Papers that mentioned: 15
bioconductor: annotatr
Annotation of Genomic Regions to Genomic Annotations
Papers that mentioned: 15
cran: ACDC
Analysis of Congruent Diversification Classes
Papers that mentioned: 15
cran: Quartet
Comparison of Phylogenetic Trees Using Quartet and Split Measures
Papers that mentioned: 15
pypi: csv
Fast CSV Parser for Python
Papers that mentioned: 15
pypi: propka
Heuristic pKa calculations with ligands
Papers that mentioned: 15
pypi: deblur
Deblur
Papers that mentioned: 15
cran: gkmSVM
Gapped-Kmer Support Vector Machine
Papers that mentioned: 15
cran: apTreeshape
Analyses of Phylogenetic Treeshape
Papers that mentioned: 15
pypi: connectivity
Library containing Server and Client for transferring messages and files via TCP
Papers that mentioned: 15
pypi: lda
Topic modeling with latent Dirichlet allocation
Papers that mentioned: 15
cran: Ridit
Ridit Analysis (An extension of the Kruskal-Wallis Test.)
Papers that mentioned: 15
cran: nls2
Non-Linear Regression with Brute Force
Papers that mentioned: 15
cran: DISTRIB
Four Essential Functions for Statistical Distributions Analysis: A New Functional Approach
Papers that mentioned: 15
bioconductor: DEsingle
DEsingle for detecting three types of differential expression in single-cell RNA-seq data
Papers that mentioned: 15
bioconductor: RCM
Fit row-column association models with the negative binomial distribution for the microbiome
Papers that mentioned: 15
pypi: HierCC
Hierarchical Clustering of cgMLST profiles
Papers that mentioned: 15
pypi: mumin
Seamlessly build the MuMiN dataset.
Papers that mentioned: 15
pypi: Pyomo
Pyomo: Python Optimization Modeling Objects
Papers that mentioned: 15
cran: free
Flexible Regularized Estimating Equations
Papers that mentioned: 15
bioconductor: PROcess
Ciphergen SELDI-TOF Processing
Papers that mentioned: 15
pypi: medaka
Neural network sequence error correction.
Papers that mentioned: 15
bioconductor: piano
Platform for integrative analysis of omics data
Papers that mentioned: 15
cran: flexclust
Flexible Cluster Algorithms
Papers that mentioned: 15
cran: networktools
Tools for Identifying Important Nodes in Networks
Papers that mentioned: 15
pypi: nibabel
Access a multitude of neuroimaging data formats
Papers that mentioned: 15
pypi: pop
The Plugin Oriented Programming System
Papers that mentioned: 15
cran: lda
Collapsed Gibbs Sampling Methods for Topic Models
Papers that mentioned: 15
cran: LiblineaR
Linear Predictive Models Based on the LIBLINEAR C/C++ Library
Papers that mentioned: 15
bioconductor: DEGraph
Two-sample tests on a graph
Papers that mentioned: 15
pypi: ATS
安卓手机自动化测试驱动包.
Papers that mentioned: 15
cran: C50
C5.0 Decision Trees and Rule-Based Models
Papers that mentioned: 15
pypi: algebra
Algebraic structures
Papers that mentioned: 15
bioconductor: CSAR
Statistical tools for the analysis of ChIP-seq data
Papers that mentioned: 15
cran: GDINA
The Generalized DINA Model Framework
Papers that mentioned: 15
cran: mvoutlier
Multivariate Outlier Detection Based on Robust Methods
Papers that mentioned: 15
cran: Familias
Probabilities for Pedigrees Given DNA Data
Papers that mentioned: 15
cran: brglm2
Bias Reduction in Generalized Linear Models
Papers that mentioned: 15
pypi: Mantis
A Minimalist ORM for Python
Papers that mentioned: 15
pypi: genesis
Implementation of FreeSWITCH Event Socket protocol with asyncio
Papers that mentioned: 15
pypi: What
A helper for testing process output
Papers that mentioned: 15