pypi: Mantis
A Minimalist ORM for Python
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cran: free
Flexible Regularized Estimating Equations
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cran: rotl
Interface to the 'Open Tree of Life' API
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pypi: medaka
Neural network sequence error correction.
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pypi: regress
Python bindings to Rust's regress ECMA regular expressions library
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cran: Ridit
Ridit Analysis (An extension of the Kruskal-Wallis Test.)
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Very Likely Science (85)
pypi: pyLDAvis
Interactive topic model visualization. Port of the R package.
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pypi: a
Python Distribution Utilities
Papers that mentioned: 15
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cran: LinkageMapView
Plot Linkage Group Maps with Quantitative Trait Loci
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cran: networktools
Tools for Identifying Important Nodes in Networks
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cran: blandr
Bland-Altman Method Comparison
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bioconductor: flowDensity
Sequential Flow Cytometry Data Gating
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cran: GDINA
The Generalized DINA Model Framework
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bioconductor: ChIPQC
Quality metrics for ChIPseq data
Papers that mentioned: 15
Very Likely Science (90)
cran: box
Write Reusable, Composable and Modular R Code
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bioconductor: SCnorm
Normalization of single cell RNA-seq data
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pypi: modeler
Reconstruct 3D models of objects from multiple images
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cran: CGP
Composite Gaussian Process Models
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pypi: scape
a framework for raspberry pi developing
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pypi: move
Moves revision-controlled files interactively in an editor.
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cran: LiblineaR
Linear Predictive Models Based on the LIBLINEAR C/C++ Library
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bioconductor: flowWorkspace
Infrastructure for representing and interacting with gated and ungated cytometry data sets.
Papers that mentioned: 15
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cran: COSINE
COndition SpecIfic sub-NEtwork
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cran: drgee
Doubly Robust Generalized Estimating Equations
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pypi: pop
The Plugin Oriented Programming System
Papers that mentioned: 15
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pypi: skygrid
The SkyGrid Python SDK
Papers that mentioned: 15
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pypi: piano
CMS built using Pyramid and MongoDB
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cran: QuACN
Quantitative Analysis of Complex Networks
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pypi: nstruct
Define complicate C/C++ structs in Python to parse/pack them from/to raw bytes
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cran: shinyBS
Twitter Bootstrap Components for Shiny
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pypi: networktools
NetworkTools are some special functions to help with software developing
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cran: psycho
Efficient and Publishing-Oriented Workflow for Psychological Science
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pypi: PLEASE
Software for the analysis of Low Energy Electron Microscopy data
Papers that mentioned: 15
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cran: regress
Gaussian Linear Models with Linear Covariance Structure
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pypi: pantomime
MIME type normalisation and labels.
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pypi: nibabel
Access a multitude of neuroimaging data formats
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Very Likely Science (80)
pypi: propka
Heuristic pKa calculations with ligands
Papers that mentioned: 15
Very Likely Science (80)
cran: shinyjs
Easily Improve the User Experience of Your Shiny Apps in Seconds
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cran: reldist
Relative Distribution Methods
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pypi: box
Papers that mentioned: 15
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cran: GISTools
Some further GIS capabilities for R
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cran: apTreeshape
Analyses of Phylogenetic Treeshape
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pypi: odyssey
A Multi-SCM Multi-Repository Workspace Management Framework
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bioconductor: PhenStat
Statistical analysis of phenotypic data
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Very Likely Science (100)
pypi: ariba
ARIBA: Antibiotic Resistance Identification By Assembly
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cran: flexclust
Flexible Cluster Algorithms
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bioconductor: DEGraph
Two-sample tests on a graph
Papers that mentioned: 15
Very Likely Science (90)
cran: ellipse
Functions for Drawing Ellipses and Ellipse-Like Confidence Regions
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cran: mcr
Method Comparison Regression
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bioconductor: bioDist
Different distance measures
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pypi: fastaq
fastAQ is a very and super lightweight package for working with FASTA/FASTQ sequences
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bioconductor: cghMCR
Find chromosome regions showing common gains/losses
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cran: CRM
Continual Reassessment Method (CRM) for Phase I Clinical Trials
Papers that mentioned: 15
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cran: gtable
Arrange 'Grobs' in Tables
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cran: csv
Read and Write CSV Files with Selected Conventions
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cran: DISTRIB
Four Essential Functions for Statistical Distributions Analysis: A New Functional Approach
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cran: DTK
Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes
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pypi: What
A helper for testing process output
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pypi: lda
Topic modeling with latent Dirichlet allocation
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pypi: algebra
Algebraic structures
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cran: scape
Statistical Catch-at-Age Plotting Environment
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cran: rEDM
Empirical Dynamic Modeling ('EDM')
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cran: Quartet
Comparison of Phylogenetic Trees Using Quartet and Split Measures
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Very Likely Science (100)
bioconductor: VariantTools
Tools for Exploratory Analysis of Variant Calls
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cran: gkmSVM
Gapped-Kmer Support Vector Machine
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pypi: mumin
Seamlessly build the MuMiN dataset.
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pypi: connectivity
Library containing Server and Client for transferring messages and files via TCP
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pypi: scythe
Find best matching set of transcripts for one-to-one orthologous genes from two or more species
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bioconductor: MetNet
Inferring metabolic networks from untargeted high-resolution mass spectrometry data
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pypi: VASA
Spatial Structure Visualization
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bioconductor: annotatr
Annotation of Genomic Regions to Genomic Annotations
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pypi: Elixir
Declarative Mapper for SQLAlchemy
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pypi: HierCC
Hierarchical Clustering of cgMLST profiles
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pypi: Pyomo
Pyomo: Python Optimization Modeling Objects
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cran: brglm2
Bias Reduction in Generalized Linear Models
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pypi: mcr
Papers that mentioned: 15
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cran: imager
Image Processing Library Based on 'CImg'
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cran: pop
A Flexible Syntax for Population Dynamic Modelling
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cran: lda
Collapsed Gibbs Sampling Methods for Topic Models
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pypi: IGC
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cran: ACDC
Analysis of Congruent Diversification Classes
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cran: STI
Calculation of the Standardized Temperature Index
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cran: NST
Normalized Stochasticity Ratio
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Very Likely Science (100)
cran: move
Visualizing and Analyzing Animal Track Data
Papers that mentioned: 15
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cran: metap
Meta-Analysis of Significance Values
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pypi: deblur
Deblur
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Very Likely Science (100)
cran: PrevMap
Geostatistical Modelling of Spatially Referenced Prevalence Data
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pypi: svm
Version manager for Apache Spark
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cran: R2BayesX
Estimate Structured Additive Regression Models with 'BayesX'
Papers that mentioned: 15
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pypi: gtable
A fast table-like container for data analytics
Papers that mentioned: 15
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pypi: quantity
Unit-safe computations with quantities (including money)
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cran: Familias
Probabilities for Pedigrees Given DNA Data
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pypi: csv
Fast CSV Parser for Python
Papers that mentioned: 15
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pypi: DIRAC
DIRAC is an interware, meaning a software framework for distributed computing.
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pypi: purr
Data reduction logging tool, Useful for remembering reductions
Papers that mentioned: 15
Very Likely Science (100)
bioconductor: DEsingle
DEsingle for detecting three types of differential expression in single-cell RNA-seq data
Papers that mentioned: 15
Very Likely Science (100)
cran: olsrr
Tools for Building OLS Regression Models
Papers that mentioned: 15
Very Likely Science (100)
cran: Hotelling
Hotelling's T^2 Test and Variants
Papers that mentioned: 15
Very Likely Science (100)
bioconductor: sigPathway
Pathway Analysis
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Very Likely Science (100)
pypi: MetaLab
MetaLab
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Very Likely Science (65)