Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: PhenStat
https://packages.ecosyste.ms/registries/bioconductor.org/packages/PhenStat
Statistical analysis of phenotypic data
1 version
Latest release: 12 months ago
15,584 downloads total
Papers Mentioning PhenStat 15
10.1016/j.xpro.2021.100768
A computational approach for identification of core modules from a co-expression network and GWAS dataCited by: 0
Author(s): Olivia L. Sabik, Cheryl Ackert‐Bicknell, Charles R. Farber
Software Mentions: 16
Published: about 3 years ago
10.1371/journal.pone.0131274
PhenStat: A Tool Kit for Standardized Analysis of High Throughput Phenotypic DataCited by: 51
Author(s): Natalja Kurbatova, Justin C. Mason, Hugh W. Morgan, Terrence F. Meehan, Natasha A. Karp
Software Mentions: 4
Published: over 9 years ago
10.1371/journal.pgen.1009190
Mouse mutant phenotyping at scale reveals novel genes controlling bone mineral densityCited by: 17
Author(s): Anna L Swan, Christine Schütt, Jan Rozman, Maria del Mar Muñiz Moreno, Stefan Brandmaier, Michelle Simon, Stefanie Leuchtenberger, Mark Griffiths, Robert Brommage, Piia Keskivali-Bond, Harald Grallert, Thomás Werner, Raffaele Teperino, Lore Becker, Gregor Miller, Ala Moshiri, John R. Seavitt, Derek D. Cissell, Fabio Mammano, Elif F. Acar, Christopher J. Lelliott, Ann M. Flenniken, Marie‐France Champy, Tania Sorg, Abdel Ayadi, Robert E. Braun, Heather Cater, Mary E. Dickinson, Paul Flicek, Juan Gallegos, Elena J. Ghirardello, Jason D. Heaney, Sylvie Jacquot, Connor Lally, John G. Logan, Lydia Teboul, Jeremy Mason, Nadine Spielmann, Colin McKerlie, Stephen A. Murray, Lauryl M. J. Nutter, Kristian F. Odfalk, Helen Parkinson, Jan Procházka, Corey Reynolds, Mohammed Selloum, František Špoutil, Karen L. Svenson, Taylor S. Vales, Sara Wells, Jacqueline K. White, Radislav Sedláček, Wolfgang Wurst, Kevin C K Lloyd, Peter I. Croucher, Helmut Fuchs, Graham R. Williams, J. H. Duncan Bassett, Valérie Gailus‐Durner, Yann Hérault, Ann‐Marie Mallon, Steve Brown, Philipp Mayer‐Kuckuk, Martin Hrabě de Angelis
Software Mentions: 3
Published: almost 4 years ago
10.1016/j.cmet.2020.05.007
Exome Sequencing Identifies Genes and Gene Sets Contributing to Severe Childhood Obesity, Linking PHIP Variants to Repressed POMC TranscriptionCited by: 32
Author(s): Gaëlle Marenne, Audrey E. Hendricks, Aliki Perdikari, Rebecca Bounds, Felicity Payne, Julia M. Keogh, Christopher J. Lelliott, Elana Henning, Saad Pathan, Sofie Ashford, Elena G. Bochukova, Vanisha Mistry, Allan Daly, Caroline Hayward, Nicholas J. Wareham, Stephen O’Rahilly, Claudia Langenberg, Eleanor Wheeler, Eleftheria Zeggini, I. Sadaf Farooqi, Inês Barroso
Software Mentions: 3
Published: over 4 years ago
10.1007/s00335-015-9599-2
A mouse informatics platform for phenotypic and translational discoveryCited by: 28
Author(s): Natalie Ring, Terrence F. Meehan, Judith A. Blake, James M. Brown, Chao-Kung Chen, Nathalie Conte, Armida Di Fenza, Tanja Fiegel, Neil R. Horner, Julius O. B. Jacobsen, Natasha A. Karp, Thomas N. Lawson, Justin C. Mason, Peter Matthews, Hugh W. Morgan, Mike Relac, Luís Santos, Damian Smedley, Duncan Sneddon, Alice Pengelly, Ilinca Tudose, Jonathan Warren, Henrik Westerberg, Gagarine Yaikhom, Helen Parkinson, Ann‐Marie Mallon
Software Mentions: 3
Published: about 9 years ago
10.1093/bioinformatics/btz744
Soft windowing application to improve analysis of high-throughput phenotyping dataCited by: 8
Author(s): Hamed Haselimashhadi, Jeremy Mason, Violeta Muñoz‐Fuentes, Federico López Gómez, Kola Babalola, Elif F. Acar, Vivek Kumar, Jacqui White, Ann M. Flenniken, Ruairidh King, Ewan Straiton, John R. Seavitt, Angelina Gaspero, Arturo Garza, Audrey E. Christianson, Chih-Wei Hsu, Corey Reynolds, Denise G. Lanza, Isabel Lorenzo, Jennie R. Green, Juan Gallegos, Ritu Bohat, Rodney C. Samaco, Surabi Veeraragavan, Jong Kim, Gregor Miller, Helmult Fuchs, Lillian Garrett, Lore Becker, Yeon Kyung Kang, David Clary, Soo Young Cho, Masahito Tamura, Nobuhiko Tanaka, Kyung Dong Soo, Alexandr Bezginov, Ghina Bou About, Marie‐France Champy, Laurent Vasseur, Sophie Leblanc, Hamid Méziane, Mohammed Selloum, Patrick T. Reilly, Nadine Spielmann, Holger R. Maier, Valérie Gailus‐Durner, Tania Sorg, Hiroshi Masuya, Yuichi Obata, Jason D. Heaney, Mary E. Dickinson, Wolfgang Wurst, Glauco P. Tocchini‐Valentini, Kevin C K Lloyd, Colin McKerlie, Je Kyung Seong, Yann Hérault, Martin Hrabé de Angelis, Steve Brown, Damian Smedley, Paul Flicek, Ann‐Marie Mallon, Helen Parkinson, Terrence F. Meehan
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pbio.1002151
Applying the ARRIVE Guidelines to an In Vivo DatabaseCited by: 70
Author(s): Natasha A. Karp, Terrence F. Meehan, Hugh W. Morgan, Justin C. Mason, Judith A. Blake, Natalja Kurbatova, Damian Smedley, Julius O. B. Jacobsen, Richard Mott, Vivek Iyer, Peter Matthews, David Melvin, Sara Wells, Ann M. Flenniken, Hiroshi Masuya, Shigeharu Wakana, Jacqueline K. White, Kevin C K Lloyd, Corey Reynolds, Richard Paylor, David B. West, Karen L. Svenson, Elissa J. Chesler, Martin Hrabě de Angelis, Glauco P. Tocchini‐Valentini, Tania Sorg, Yann Hérault, Helen Parkinson, Ann Marie Mallon, Steve Brown
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0242933
OpenStats: A robust and scalable software package for reproducible analysis of high-throughput phenotypic dataCited by: 12
Author(s): Hamed Haselimashhadi, Jeremy Mason, Ann‐Marie Mallon, Damian Smedley, Terrence F. Meehan, Helen Parkinson
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0111239
Impact of Temporal Variation on Design and Analysis of Mouse Knockout Phenotyping StudiesCited by: 44
Author(s): Natasha A. Karp, Anneliese O. Speak, Jacqueline K. White, David J. Adams, Martin Hrabé de Angelis, Yann Hérault, Richard Mott
Software Mentions: 2
Published: almost 10 years ago
10.1242/dmm.031864
Lyplal1 is dispensable for normal fat deposition in miceCited by: 6
Author(s): Rachel A. Watson, Amy S. Gates, Elizabeth Wynn, Fiona Calvert, Amandine Girousse, Christopher J. Lelliott, Inês Barroso
Software Mentions: 2
Published: almost 8 years ago
10.1186/s13326-016-0050-8
Reporting phenotypes in mouse models when considering body size as a potential confounderCited by: 9
Author(s): Anika Oellrich, Terrence F. Meehan, Helen Parkinson, Sirarat Sarntivijai, Jacqueline K. White, Natasha A. Karp
Software Mentions: 2
Published: over 8 years ago
10.1534/genetics.116.195388
Improving the Identification of Phenotypic Abnormalities and Sexual Dimorphism in Mice When Studying Rare Event Categorical CharacteristicsCited by: 10
Author(s): Natasha A. Karp, Ruth Heller, Shay Yaacoby, Jacqueline K. White, Yoav Benjamini
Software Mentions: 1
Published: over 7 years ago
10.1038/nutd.2017.6
The role of sex and body weight on the metabolic effects of high-fat diet in C57BL/6N miceCited by: 70
Author(s): Camilla Ingvorsen, Natasha A. Karp, Christopher J. Lelliott
Software Mentions: 1
Published: over 7 years ago
10.1007/s10592-018-1072-9
The International Mouse Phenotyping Consortium (IMPC): a functional catalogue of the mammalian genome that informs conservationCited by: 74
Author(s): Violeta Muñoz-Fuentes, Pilar Cacheiro, Terrence F. Meehan, Antonio Aguilar-Pimentel, Steve Brown, Ann M. Flenniken, Paul Flicek, Antonella Galli, Hamed Haseli Mashhadi, Martin Hrabé de Angelis, Jong Kim, Kevin C K Lloyd, Colin McKerlie, Hugh W. Morgan, Stephen A. Murray, Lauryl M. J. Nutter, Patrick T. Reilly, John R. Seavitt, Je Kyung Seong, Michelle Simon, Hannah Wardle‐Jones, Ann‐Marie Mallon, Damian Smedley, Helen Parkinson
Software Mentions: 1
Published: over 6 years ago
10.1038/s42003-018-0226-0
Identification of genes required for eye development by high-throughput screening of mouse knockoutsCited by: 32
Author(s): Bret A. Moore, Brian C. Leonard, Lionel Sebbag, Sydney Edwards, Ann Cooper, Denise M. Imai, Ewan Straiton, Luís Santos, Christopher M. Reilly, Stephen M. Griffey, Lynette Bower, David Clary, Jeremy Mason, Michel J. Roux, Hamid Méziane, Yann Hérault, Anna L Swan, Ruairidh King, Piia Keskivali-Bond, Lois Kelsey, Igor Vukobradovic, Dawei Qu, Ruolin Guo, Elisa Tran, Lily Morikawa, Milan Ganguly, Napoleon Law, Xueyuan Shang, Patricia Feugas, Yanchun Wang, Y. Zhu, Kyle Duffin, A. I. Ramirez, Patricia Penton, Valerie Laurin, Shannon Clarke, Qing Lan, Gillian Sleep, Amie Creighton, Elsa Jacob, Ozge Danisment, Joanna Joeng, Marina Gertsenstein, Monica Pereira, Sue MacMaster, Sandra Tondat, Tracy Carroll, Jorge Cabezas, Amit N. Patel, Jane Hunter, Gregory B. Clark, Mohammed Bubshait, David C. Miller, Khondoker Sohel, Alexandr Bezginov, Matthew J. McKay, Kevin A. Peterson, Leslie O. Goodwin, Rachel Urban, Susan Kales, Rob Hallett, Dong Nguyen-Bresinsky, Timothy Leach, Audrie Seluke, Sara Perkins, Amanda Slater, Rick Bedigian, Leah Rae Donahue, Robert A. Taft, James M. Denegre, Zachery Seavey, Amelia M. Willett, Lindsay Bates, Leslie Haynes, Julie Creed, Catherine Witmeyer, Willson Roper, James Clark, Pamela Stanley, Samantha Burrill, Jennifer Ryan, Yuichi Obata, Masahito Tamura, Hideki Kaneda, Tamio Furuse, Kimio Kobayashi, Ikuo Miura, Ikuko Yamada, Hiroshi Masuya, Nobuhiko Tanaka, Shin-ichi Ayabe, Atsushi Yoshiki, Valerie E. Vancollie, Francesco Chiani, Chiara Di Pietro, Gianfranco Di Segni, Olga Ermakova, Fabrizio Ferrara, Paolo Fruscoloni, Alessia Gambadoro, Serena Gastaldi, Elisabetta Golini, Gina La Sala, Silvia Mandillo, D. Marazziti, Marzia Massimi, Rafaele Matteoni, Tiziana Orsini, Miriam Pasquini, Marcello Raspa, Aline Rauch, Gianfranco Rossi, Nicoletta Rossi, Sabrina Putti, Ferdinando Scavizzi, Giuseppe D. Tocchini-Valentini, Colin McKerlie, Ann M. Flenniken, Lauryl M. J. Nutter, Zorana Berberovic, Celeste Owen, Susan Newbigging, Hibret A. Adissu, Mohammed Eskandarian, Chih-Wei Hsu, Sowmya Kalaga, Uchechukwu Udensi, Chinwe Asomugha, Ritu Bohat, Juan Gallegos, John R. Seavitt, Jason D. Heaney, Arthur L. Beaudet, Mary E. Dickinson, Monica J. Justice, Vivek Philip, Vivek Kumar, Karen L. Svenson, Robert E. Braun, Sara Wells, Heather Cater, Michelle Stewart, Sharon Clementson-Mobbs, Russell Joynson, Xiang Gao, Tomohiro Suzuki, Shigeharu Wakana, Damian Smedley, Jiyeong Seong, Glauco P. Tocchini‐Valentini, Mark Moore, Colin Fletcher, Natasha A. Karp, Ramiro Ramirez-Solis, Jacqueline K. White, Martin Hrabě de Angelis, Wolfgang Wurst, Sara M Thomasy, Paul Flicek, Helen Parkinson, Steve Brown, Fabio Mammano, Patsy M. Nishina, Stephen A. Murray, Mark P. Krebs, Ann‐Marie Mallon, Kevin C K Lloyd, Christopher J. Murphy, Ala Moshiri
Software Mentions: 1
Published: almost 6 years ago