Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.xpro.2021.100768

https://doi.org/10.1016/j.xpro.2021.100768

A computational approach for identification of core modules from a co-expression network and GWAS data

Cited by: 0
Author(s): Olivia L. Sabik, Cheryl Ackert‐Bicknell, Charles R. Farber
Published: about 3 years ago

Software Mentions 16

bioconductor: biomaRt

Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: GenomicRanges

Representation and manipulation of genomic intervals
Papers that mentioned: 323

bioconductor: PhenStat

Statistical analysis of phenotypic data
Papers that mentioned: 15

cran: BiocManager

Access the Bioconductor Project Package Repository
Papers that mentioned: 35

cran: coloc

Colocalisation Tests of Two Genetic Traits
Papers that mentioned: 49

cran: devtools

Tools to Make Developing R Packages Easier
Papers that mentioned: 157

cran: dplyr

A Grammar of Data Manipulation
Papers that mentioned: 1,213

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: knitr

A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157

cran: tidyverse

Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023

cran: WGCNA

Weighted Correlation Network Analysis
Papers that mentioned: 3,479

pypi: browser

A package to prevent Dependency Confusion attacks against Yandex.
Papers that mentioned: 2,125

pypi: coloc

the COLOC method by Giambartolomei et al.
Papers that mentioned: 49

pypi: devtools

Python's missing debug print command, and more.
Papers that mentioned: 157

pypi: mm

CLI for MavensMate
Papers that mentioned: 8