Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: apTreeshape

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/apTreeshape

Analyses of Phylogenetic Treeshape
14 versions
Latest release: about 4 years ago
5 dependent packages
463 downloads last month

Papers Mentioning apTreeshape 15

10.1002/ece3.7931

The influence of phylogeny and life history on telomere lengths and telomere rate of change among bird species: A meta‐analysis
Cited by: 7
Author(s): François Criscuolo, F. Stephen Dobson, Quentin Schull
Software Mentions: 7
Published: about 3 years ago

10.1093/molbev/msz058

Transmission Trees on a Known Pathogen Phylogeny: Enumeration and Sampling
Cited by: 14
Author(s): Matthew Hall, Caroline Colijn
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0095040

Evolutionary Dynamics in the Southwest Indian Ocean Marine Biodiversity Hotspot: A Perspective from the Rocky Shore Gastropod Genus Nerita
Cited by: 15
Author(s): Bautisse Postaire, J. Henrich Bruggemann, Hélène Magalon, Baptiste Faure
Software Mentions: 6
Published: over 10 years ago

10.3389/fphys.2020.00706

Integrating Mortality Risk and the Adaptiveness of Hibernation
Cited by: 10
Author(s): Théo Constant, Sylvain Giroud, Vincent A. Viblanc, Mathilde L. Tissier, Patrick Bergeron, F. Stephen Dobson, Caroline Habold
Software Mentions: 5
Published: over 4 years ago

10.1002/ece3.1406

On the analysis of phylogenetically paired designs
Cited by: 13
Author(s): Jennifer L. Funk, Cyril Rakovski, J. Michael Macpherson
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0179553

The tree balance signature of mass extinction is erased by continued evolution in clades of constrained size with trait-dependent speciation
Cited by: 3
Author(s): Guan-Dong Yang, Paul‐Michael Agapow, Gabriel Yedid
Software Mentions: 4
Published: over 7 years ago

10.1093/sysbio/syt033

Delimiting Species Using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: A Revised Method and Evaluation on Simulated Data Sets
Cited by: 1,118
Author(s): Tomochika Fujisawa, Timothy G. Barraclough
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pcbi.1005316

Inference of Transmission Network Structure from HIV Phylogenetic Trees
Cited by: 31
Author(s): Federica Giardina, Ethan Romero-Severson, Jan Albert, Tom Britton, Thomas Leitner
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0041307

Genome-Wide Characterization of Genetic Variation in the Unicellular, Green Alga Chlamydomonas reinhardtii
Cited by: 20
Author(s): Hyo Sik Jang, Ian M. Ehrenreich
Software Mentions: 3
Published: over 12 years ago

10.1093/sysbio/syx046

A Metric on Phylogenetic Tree Shapes
Cited by: 49
Author(s): Caroline Colijn, Giacomo Plazzotta
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0122407

Phylogenetic Molecular Species Delimitations Unravel Potential New Species in the Pest Genus Spodoptera Guenée, 1852 (Lepidoptera, Noctuidae)
Cited by: 68
Author(s): Pascaline Dumas, Jérôme Barbut, Bruno Le Rü, Jean‐François Silvain, Anne‐Laure Clamens, Emmanuelle d’Alençon, Gaël J. Kergoat
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0048047

Secondary Sympatry Caused by Range Expansion Informs on the Dynamics of Microendemism in a Biodiversity Hotspot
Cited by: 29
Author(s): Romain Nattier, Philippe Grandcolas, Marianne Élias, Laure Desutter‐Grandcolas, Hervé Jourdan, Arnaud Couloux, Tony Robillard
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pgen.0020122

Matrilineal Fertility Inheritance Detected in Hunter–Gatherer Populations Using the Imbalance of Gene Genealogies
Cited by: 32
Author(s): Michaël G. B. Blum, Évelyne Heyer, F. Ochsenbein, Frédéric Austerlitz
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pcbi.1004940

Effects of Darwinian Selection and Mutability on Rate of Broadly Neutralizing Antibody Evolution during HIV-1 Infection
Cited by: 33
Author(s): Zizhang Sheng, Chaim A. Schramm, Mark Connors, Lynn Morris, John R. Mascola, Peter D. Kwong, Lawrence Shapiro
Software Mentions: 1
Published: over 8 years ago