Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: flowDensity
https://packages.ecosyste.ms/registries/bioconductor.org/packages/flowDensity
Sequential Flow Cytometry Data Gating
1 version
Latest release: 10 months ago
3 dependent packages
32,034 downloads total
Papers Mentioning flowDensity 15
10.1186/s12859-019-3152-3
flowEMMi: an automated model-based clustering tool for microbial cytometric dataCited by: 16
Author(s): Joachim Ludwig, Christian Höner zu Siederdissen, Zishu Liu, Peter F. Stadler, Susann Müller
Software Mentions: 18
Published: over 4 years ago
10.1186/s12859-021-04125-4
Censcyt: censored covariates in differential abundance analysis in cytometryCited by: 0
Author(s): Reto Gerber, Mark D. Robinson
Software Mentions: 8
Published: about 3 years ago
10.3389/fimmu.2020.580373
Systems Biology Methods Applied to Blood and Tissue for a Comprehensive Analysis of Immune Response to Hepatitis B Vaccine in AdultsCited by: 13
Author(s): Rym Ben‐Othman, Bing Cai, Aaron C. Liu, Natallia Varankovich, Daniel He, Travis M. Blimkie, Ahwon Lee, Erin E. Gill, M. A. Novotny, Brian D. Aevermann, Sibyl Drissler, Casey P. Shannon, Sarah McCann, Kim Marty, Gordean Bjornson, Rachel D. Edgar, David Lin, Nicole Gladish, Julia L. Maclsaac, Nelly Amenyogbe, Queenie Chan, Alba Llibre, Collin Joyce, Elise Landais, Khoa Le, Samantha M. Reiss, Wayne C. Koff, Colin Havenar-Daughton, Manraj K.S. Heran, Bippan S. Sangha, David R. Walt, Mel Krajden, Shane Crotty, Devin Sok, Bryan Briney, Dennis R. Burton, Darragh Duffy, Leonard J. Foster, William W. Mohn, Michael S. Kobor, Scott J. Tebbutt, Ryan R. Brinkman, Richard H. Scheuermann, Robert E. W. Hancock, Tobias R. Kollmann, Manish Sadarangani
Software Mentions: 7
Published: over 3 years ago
10.1371/journal.pcbi.1009071
CytoPy: An autonomous cytometry analysis frameworkCited by: 8
Author(s): Ross J. Burton, Raya Ahmed, Simone Cuff, Sarah Baker, Andreas Artemiou, Matthias Eberl
Software Mentions: 6
Published: about 3 years ago
10.1371/journal.pone.0205291
CytoBinning: Immunological insights from multi-dimensional dataCited by: 1
Author(s): Yang Shen, Benjamin Chaigne-Delalande, Richard W. Lee, Wolfgang Losert
Software Mentions: 6
Published: over 5 years ago
10.7554/eLife.51739
A phenotypic screening platform utilising human spermatozoa identifies compounds with contraceptive activityCited by: 14
Author(s): Franz S Gruber, Zoe C Johnston, Christopher L.R. Barratt, Paul D. Andrews
Software Mentions: 5
Published: over 4 years ago
10.3389/fimmu.2015.00380
An Introduction to Automated Flow Cytometry Gating Tools and Their ImplementationCited by: 56
Author(s): Chris P. Verschoor, Alina Lelic, Jonathan L. Bramson, Dawn M. E. Bowdish
Software Mentions: 5
Published: about 9 years ago
10.1038/s41598-020-68693-w
Inhibition of indole production increases the activity of quinolone antibiotics against E. coli persistersCited by: 13
Author(s): Ashraf Zarkan, Marta Matuszewska, Stephen Trigg, Meng Zhang, Daaniyah Belgami, Cameron Croft, Junyan Liu, Sawssen El-Ouisi, Jack Greenhalgh, James S. Duboff, Taufiq Rahman, David Summers
Software Mentions: 4
Published: about 4 years ago
10.3389/fimmu.2021.740708
Evidence of SARS-CoV-2-Specific Memory B Cells Six Months After Vaccination With the BNT162b2 mRNA VaccineCited by: 78
Author(s): Annalisa Ciabattini, Gabiria Pastore, Fabio Fiorino, Jacopo Polvere, Simone Lucchesi, Elena Pettini, Stefano Auddino, Ilaria Rancan, Miriam Durante, Michele Miscia, Barbara Rossetti, Massimiliano Fabbiani, Francesca Montagnani, Donata Medaglini
Software Mentions: 4
Published: almost 3 years ago
10.1371/journal.pone.0188853
Indole at low concentration helps exponentially growing Escherichia coli survive at high temperatureCited by: 7
Author(s): Junyan Liu, David Summers
Software Mentions: 3
Published: over 6 years ago
10.3389/fimmu.2020.571884
“Age Related Differences in the Biology of Chronic Graft-Versus-Host Disease After Hematopoietic Stem Cell Transplantation”Cited by: 13
Author(s): Geoff D.E. Cuvelier, Amanda Li, Sibyl Drissler, Amina Kariminia, Sayeh Abdossamadi, Jacob Rozmus, Jean‐Pierre Chanoine, Bernard Ng, Sara Mostafavi, Ryan R. Brinkman, Kirk R. Schultz
Software Mentions: 2
Published: almost 4 years ago
10.1038/srep20686
Standardizing Flow Cytometry Immunophenotyping Analysis from the Human ImmunoPhenotyping ConsortiumCited by: 219
Author(s): Greg Finak, Marc Langweiler, Martha Jaimes, Mehrnoush Malek, Jafar Taghiyar, Yael Korin, Khadir Raddassi, Lesley Devine, Gerlinde Obermoser, Marcin Ł. Pękalski, Nikolas Pontikos, Alain Diaz, Susanne Heck, Federica Villanova, Nadia Terrazzini, Florian Kern, Qian Yu, Rick Stanton, Kui Wang, Aaron Brandes, John Ramey, Nima Aghaeepour, Tim R. Mosmann, Richard H. Scheuermann, Elaine F. Reed, Karolina Palucka, Virginia Pascual, Bonnie B. Blomberg, Frank O. Nestle, Robert B. Nussenblatt, Ryan R. Brinkman, Raphaël Gottardo, Holden T. Maecker, J. Philip McCoy
Software Mentions: 2
Published: over 8 years ago
10.1038/s41598-020-65016-x
Validation of a hybrid approach to standardize immunophenotyping analysis in large population studies: The Health and Retirement StudyCited by: 8
Author(s): De Von Hunter-Schlichting, John Lane, Benjamin R. Cole, Zachary Flaten, Hélène Barcelo, Ramya Ramasubramanian, Erin L. Cassidy, Jessica D. Faul, Eileen M. Crimmins, Nathan Pankratz, Bharat Thyagarajan
Software Mentions: 2
Published: about 4 years ago
10.3390/cancers13010017
High-Dimensional Analysis of Single-Cell Flow Cytometry Data Predicts Relapse in Childhood Acute Lymphoblastic LeukaemiaCited by: 11
Author(s): Salvador Chulián, Álvaro Martínez-Rubio, Víctor M. Pérez‐García, María Rosa, Cristina Blázquez Goñi, Josefina Gutiérrez, Lourdes Hermosín-Ramos, Águeda Molinos Quintana, Teresa Caballero‐Velázquez, Manuel Ramírez-Orellana, Ana Castillo Robleda, Juan Luis Fernández-Martínez
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0108481
Immune Biomarkers Predictive of Respiratory Viral Infection in Elderly Nursing Home ResidentsCited by: 41
Author(s): Jennie Johnstone, Robin Parsons, Fernando Mendes Botelho, Jamie Millar, Shelly McNeil, Tamàs Fülöp, Janet E. McElhaney, Melissa K. Andrew, Stephen D. Walter, P. J. Devereaux, Mehrnoush Malekesmaeili, Ryan R. Brinkman, James B. Mahony, Jonathan L. Bramson, Mark Loeb
Software Mentions: 1
Published: almost 10 years ago