Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: CGP

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/CGP

Composite Gaussian Process Models
3 versions
Latest release: over 6 years ago
1 dependent package
156 downloads last month

Papers Mentioning CGP 15

Clinical drug response can be predicted using baseline gene expression levels and in vitro drug sensitivity in cell lines
Cited by: 571
Author(s): Paul Geeleher, Nancy J. Cox, R. Stephanie Huang
Software Mentions: 9
Published: over 10 years ago

10.1186/s13059-016-1050-9

Cancer biomarker discovery is improved by accounting for variability in general levels of drug sensitivity in pre-clinical models
Cited by: 35
Author(s): Paul Geeleher, Nancy J. Cox, R. Stephanie Huang
Software Mentions: 3
Published: almost 8 years ago

10.3389/fmicb.2017.02528

Prospects for Fungal Bioremediation of Acidic Radioactive Waste Sites: Characterization and Genome Sequence of Rhodotorula taiwanensis MD1149
Cited by: 49
Author(s): Rok Tkavc, Vera Y. Matrosova, Olga Grichenko, Cene Gostinčar, Robert P. Volpe, Polina Klimenkova, Elena K. Gaidamakova, Carol L. Ecale Zhou, Benjamin Stewart, Mathew G. Lyman, Stephanie Malfatti, Bonnee Rubinfeld, Mélanie Courtot, Jatinder Singh, Clifton L. Dalgard, Theron Hamilton, K. G. Frey, Nina Gunde‐Cimerman, Lawrence Dugan, Michael J. Daly
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0013367

DEGAS: De Novo Discovery of Dysregulated Pathways in Human Diseases
Cited by: 110
Author(s): Igor Ulitsky, Akshay Krishnamurthy, Richard M. Karp, Ron Shamir
Software Mentions: 2
Published: almost 14 years ago

10.1038/s41416-018-0109-7

Cancer subtype identification using somatic mutation data
Cited by: 46
Author(s): Marieke L. Kuijjer, Joseph N. Paulson, Peter Salzman, Wei Ding, John Quackenbush
Software Mentions: 2
Published: over 6 years ago

10.3390/cancers12061627

Molecular and Genomic Profiling of Lung Cancer in the Era of Precision Medicine: A Position Paper from the Italian Association of Thoracic Oncology (AIOT)
Cited by: 10
Author(s): Nicola Normanno, Massimo Barberis, Filippo de Marinis, Cesare Gridelli
Software Mentions: 1
Published: about 4 years ago

10.3389/fnagi.2021.637404

Cognitive and Structural Correlates of Conversational Speech Timing in Mild Cognitive Impairment and Mild-to-Moderate Alzheimer’s Disease: Relevance for Early Detection Approaches
Cited by: 6
Author(s): Céline De Looze, Amir Dehsarvi, Lisa Crosby, Aisling Vourdanou, Robert F. Coen, Brian A. Lawlor, Richard B. Reilly
Software Mentions: 1
Published: over 3 years ago

10.3389/fendo.2014.00207

Structural Analysis of How Podocytes Detach from the Glomerular Basement Membrane Under Hypertrophic Stress
Cited by: 40
Author(s): Wilhelm Kriz, Brunhilde Hähnel, Hiltraud Hosser, Sigrid Rösener, Rüdiger Waldherr
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-017-01058-y

Network-assisted analysis of GWAS data identifies a functionally-relevant gene module for childhood-onset asthma
Cited by: 11
Author(s): Yuanlong Liu, Myriam Brossard, Chloé Sarnowski, Amaury Vaysse, Miriam F. Moffatt, Patricia Margaritte‐Jeannin, Felipe Llinares-López, Marie‐Hélène Dizier, Mark Lathrop, Woc Cookson, Emmanuelle Bouzigon, Florence Demenais
Software Mentions: 1
Published: over 7 years ago

10.1186/s12859-020-03545-y

The corrected gene proximity map for analyzing the 3D genome organization using Hi-C data
Cited by: 2
Author(s): Yuxiang Cheng, Alberto Paccanaro, Mark Gerstein, Koon-Kiu Yan
Software Mentions: 1
Published: over 4 years ago

10.3390/jpm10040252

Establishment of a Molecular Tumor Board (MTB) and Uptake of Recommendations in a Community Setting
Cited by: 17
Author(s): Ari M. Vanderwalde, Axel Grothey, Daniel A. Vaena, Gregory A. Vidal, Adam C. ElNaggar, Gabriella Bufalino, Lee S. Schwartzberg
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12862-020-01616-5

A coarse-graining, ultrametric approach to resolve the phylogeny of prokaryotic strains with frequent homologous recombination
Cited by: 1
Author(s): Tin Yau Pang
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2164-8-206

A novel technique for measuring variations in DNA copy-number: competitive genomic polymerase chain reaction
Cited by: 7
Author(s): Kyoko Iwao-Koizumi, Katsuhiro Maekawa, Yohko Nakamura, Sakae Saitō, Shoko Kawamoto, Akira Nakagawara, Kikuya Kato
Software Mentions: 1
Published: about 17 years ago

10.1186/1756-0500-3-261

Integrating the markers Pan I and haemoglobin with the genetic linkage map of Atlantic cod (Gadus morhua)
Cited by: 18
Author(s): Tudor Borza, Brent Higgins, Gary Simpson, Sharen Bowman
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0184711

Artificial intelligence in peer review: How can evolutionary computation support journal editors?
Cited by: 24
Author(s): Maciej J. Mrowinski, Piotr Fronczak, Agata Fronczak, Marcel Ausloos, Olgica Nedić
Software Mentions: 1
Published: almost 7 years ago