Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: RCM

https://packages.ecosyste.ms/registries/bioconductor.org/packages/RCM

Fit row-column association models with the negative binomial distribution for the microbiome
1 version
Latest release: 12 months ago
4,700 downloads total

Papers Mentioning RCM 15

Current Mathematical Models for Analyzing Anti-Malarial Antibody Data with an Eye to Malaria Elimination and Eradication
Cited by: 35
Author(s): Nuno Sepúlveda, Gillian Stresman, Michael T. White, Chris Drakeley
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0193094

Jointly learning word embeddings using a corpus and a knowledge base
Cited by: 24
Author(s): Mohammed Alsuhaibani, Danushka Bollegala, Takanori Maehara, Ken Kawarabayashi
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0159980

Comparison of Confocal and Super-Resolution Reflectance Imaging of Metal Oxide Nanoparticles
Cited by: 32
Author(s): Emily J. Guggenheim, Abdullah O. Khan, Jeremy Pike, Lynne Chang, Iseult Lynch, Joshua Z. Rappoport
Software Mentions: 3
Published: about 8 years ago

10.1186/1471-2105-14-20

Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. Using the relative complexity measure
Cited by: 4
Author(s): Yasin Bakış, Hasan H. Otu, Nivart Taşçı, Cem Meydan, Neş’e Bilgin, Sırrı Yüzbaşıoğlu, Osman Uğur Sezerman
Software Mentions: 3
Published: over 11 years ago

10.1002/ece3.7975

Phylogeographic analysis delimits three evolutionary significant units of least chipmunks in North America and identifies unique genetic diversity within the imperiled Peñasco population
Cited by: 3
Author(s): Emily E. Puckett, Sean M. Murphy, Gideon S. Bradburd
Software Mentions: 3
Published: about 3 years ago

10.1016/j.fcr.2019.107578

Field-specific nutrient management using Rice Crop Manager decision support tool in Odisha, India
Cited by: 20
Author(s): Sheetal Sharma, Kalyani Rout, Chandramani Khanda, Rahul Tripathi, Mohammad Shahid, A. K. Nayak, Swetapadma Satpathy, Narayan Chandra Banik, Wasim Iftikar, Nabakishore Parida, Vivek Kumar, Amit Kumar Mishra, Rowena L. Castillo, Theresa Velasco, R. J. Buresh
Software Mentions: 2
Published: about 5 years ago

10.1038/s42003-019-0518-z

Bioorthogonal labeling with tetrazine-dyes for super-resolution microscopy
Cited by: 89
Author(s): Gerti Beliu, Andreas Kurz, Alexander Kuhlemann, Lisa Behringer-Pliess, Mara Meub, Natalia Wolf, Jürgen Seibel, Zhen‐Dan Shi, Martin J. Schnermann, Jonathan B. Grimm, Luke D. Lavis, Sören Doose, Markus Sauer
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pcbi.1008496

PIEZO1 and the mechanism of the long circulatory longevity of human red blood cells
Cited by: 10
Author(s): Simon Rogers, Virgilio L. Lew
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0021614

LRR Conservation Mapping to Predict Functional Sites within Protein Leucine-Rich Repeat Domains
Cited by: 47
Author(s): Laura Helft, V. Dashwantha Reddy, Xiyang Chen, Teresa Koller, L. Federici, Juan Fernández‐Recio, Rishabh Gupta, Andrew F. Bent
Software Mentions: 2
Published: about 13 years ago

10.3390/life11030192

Transfer of Antibiotic Resistance Plasmid from Commensal E. coli towards Human Intestinal Microbiota in the M-SHIME: Effect of E. coli dosis, Human Individual and Antibiotic Use
Cited by: 4
Author(s): Ellen Lambrecht, Els Van Coillie, Nico Boon, Marc Heyndrickx, Tom Van de Wiele
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0205474

A unified framework for unconstrained and constrained ordination of microbiome read count data
Cited by: 14
Author(s): Stijn Hawinkel, Frederiek‐Maarten Kerckhof, Luc Bijnens, Olivier Thas
Software Mentions: 2
Published: over 5 years ago

10.1007/s00330-016-4504-2

Feasibility of a 2nd generation MR-compatible manipulator for transrectal prostate biopsy guidance
Cited by: 27
Author(s): Joyce G. R. Bomers, Dennis Bosboom, Gerrit Tigelaar, Jan Sabisch, Jurgen J. Fütterer, Derya Yakar
Software Mentions: 1
Published: about 8 years ago

10.1100/2012/972672

Climate Impacts of Deforestation/Land-Use Changes in Central South America in the PRECIS Regional Climate Model: Mean Precipitation and Temperature Response to Present and Future Deforestation Scenarios
Cited by: 13
Author(s): Pablo O. Canziani, Gerardo Carbajal Benítez
Software Mentions: 1
Published: almost 13 years ago

10.7150/jca.47026

The potential utility of integrated reflectance confocal microscopy-optical coherence tomography for guiding triage and therapy of basal cell carcinomas
Cited by: 9
Author(s): Nicusor Iftimia, Aditi Sahu, Miguel Córdova, Gopi Maguluri, Melissa Gill, Christi Alessi‐Fox, Salvador González, Cristián Navarrete‐Dechent, Ashfaq A. Marghoob, Chih-Shan J. Chen, Milind Rajadhyaksha
Software Mentions: 1
Published: almost 5 years ago

10.3390/molecules15096638

Structural and Pharmacological Effects of Ring-Closing Metathesis in Peptides
Cited by: 35
Author(s): Øyvind Jacobsen, Jo Klaveness, Pål Rongved
Software Mentions: 1
Published: about 14 years ago