Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: EEM

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/EEM

Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data
3 versions
Latest release: over 8 years ago
1 dependent package
173 downloads last month

Papers Mentioning EEM 15

Gene Set-Based Module Discovery Decodes cis-Regulatory Codes Governing Diverse Gene Expression across Human Multiple Tissues
Cited by: 2
Author(s): Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Satoru Miyano
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0143332

A Hominin Femur with Archaic Affinities from the Late Pleistocene of Southwest China
Cited by: 13
Author(s): Darren Curnoe, Xueping Ji, Wu Liu, Bao Zhende, Paul S.C. Taçon, Liang Ren
Software Mentions: 2
Published: almost 9 years ago

10.1186/1471-2105-10-71

Gene set-based module discovery in the breast cancer transcriptome
Cited by: 35
Author(s): Atsushi Niida, Andrew D. Smith, Seiya Imoto, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0139576

Evaluating Pillar Industry’s Transformation Capability: A Case Study of Two Chinese Steel-Based Cities
Cited by: 10
Author(s): Zhidong Liu, Dora Marinová, Xiumei Guo, Yuan Gao
Software Mentions: 1
Published: almost 9 years ago

10.1186/1758-2946-5-18

Predicting pK a values from EEM atomic charges
Cited by: 14
Author(s): Radka Svobodová Vařeková, Stanislav Geidl, Crina-Maria Ionescu, Ondřej Skřehota, Tomáš Bouchal, David Sehnal, Ruben Abagyan, Jaroslav Koča
Software Mentions: 1
Published: over 11 years ago

10.1186/s13321-015-0099-x

AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like molecules
Cited by: 50
Author(s): Crina-Maria Ionescu, David Sehnal, Francesco Luca Falginella, Purbaj Pant, Lukáš Pravda, Tomáš Bouchal, Radka Svobodová Vařeková, Stanislav Geidl, Jaroslav Koča
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13321-015-0107-1

High-quality and universal empirical atomic charges for chemoinformatics applications
Cited by: 28
Author(s): Stanislav Geidl, Tomáš Bouchal, Tomáš Raček, Radka Svobodová Vařeková, Václav Hejret, Aleš Křenek, Ruben Abagyan, Jaroslav Koča
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13321-021-00528-w

Optimized SQE atomic charges for peptides accessible via a web application
Cited by: 2
Author(s): Ondřej Schindler, Tomáš Raček, Aleksandra Maršavelski, Jaroslav Koča, Karel Berka, Radka Svobodová
Software Mentions: 1
Published: about 3 years ago

10.1038/srep10207

Impact of dataset diversity on accuracy and sensitivity of parallel factor analysis model of dissolved organic matter fluorescence excitation-emission matrix
Cited by: 69
Author(s): Hui Yu, Heng Liang, Fangshu Qu, Zheng-shuang Han, Senlin Shao, Haiqing Chang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep22371

Integrated Molecular Profiling of Human Gastric Cancer Identifies DDR2 as a Potential Regulator of Peritoneal Dissemination
Cited by: 56
Author(s): Junji Kurashige, Takanori Hasegawa, Atsushi Niida, Keizō Sugimachi, Niantao Deng, Kosuke Mima, Ryutaro Uchi, Genta Sawada, Yusuke Takahashi, Hidetoshi Eguchi, Masafumi Inomata, Seigo Kitano, Takeo Fukagawa, Mitsuru Sasako, Hiroki Sasaki, Shin Sasaki, Masaki Mori, Kazuyoshi Yanagihara, Hideo Baba, Satoru Miyano, Patrick Tan, Koshi Mimori
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24801

Nearly diffraction-limited X-ray focusing with variable-numerical-aperture focusing optical system based on four deformable mirrors
Cited by: 38
Author(s): Satoshi Matsuyama, Hiroki Nakamori, T. Goto, Takashi Kimura, Krishna P. Khakurel, Yoshiki Kohmura, Yasuhisa Sano, Makina Yabashi, Tetsuya Ishikawa, Yoshinori Nishino, Kazuto Yamauchi
Software Mentions: 1
Published: over 8 years ago

10.1007/s10895-020-02640-w

A Rapid Method to Measure Serum Retinol Concentrations in Japanese Black Cattle Using Multidimensional Fluorescence
Cited by: 7
Author(s): Yoshio Tamura, Hiroki Inoue, Satoshi Takemoto, Kazuo Hirano, Kazutoshi Miyaura
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijerph110606231

Patients’ Perspective of the Design of Provider-Patients Electronic Communication Services
Cited by: 4
Author(s): Petr Silhavy, Radek Šilhavý, Zdenka Prokopová
Software Mentions: 1
Published: over 10 years ago

10.1155/2013/547902

Current Stem Cell Delivery Methods for Myocardial Repair
Cited by: 59
Author(s): Calvin C. Sheng, Li Zhou, Jijun Hao
Software Mentions: 1
Published: over 11 years ago

10.3390/molecules21101381

The Eighth Central European Conference “Chemistry towards Biology”: Snapshot
Cited by: 5
Author(s): András Perczel, Atanas G. Atanasov, Vladimı́r Sklenář, Jiří Nováček, Veronika Papoušková, Pavel Kadeřávek, Lukáš Žı́dek, Henryk Kozłowski, Joanna Wątły, Aleksandra Hecel, Paulina Kołkowska, Jaroslav Koča, Radka SvobodováVařeková, Lukáš Pravda, David Sehnal, Vladimír Horský, Stanislav Geidl, Ricardo D. Enriz, Pavel Matějka, Adéla Jeništová, Marcela Dendisová, A. Kokaislová, Volkmar Weissig, Mark Olsen, Aidan Coffey, Jude Ajuebor, Ruth Keary, Marta Sanz-Gaitero, Mark J. van Raaij, Olivia McAuliffe, Birgit Waltenberger, Andrei Mocan, Karel Šmejkal, Elke H. Heiss, Marc Diederich, Robert Musioł, Janez Košmrlj, Jarosław Polański, Josef Jampílek
Software Mentions: 1
Published: almost 8 years ago