Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: EEM
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/EEM
Read and Preprocess Fluorescence Excitation-Emission Matrix
(EEM) Data
3 versions
Latest release: over 8 years ago
1 dependent package
173 downloads last month
Papers Mentioning EEM 15
10.1371/journal.pone.0010910
Gene Set-Based Module Discovery Decodes cis-Regulatory Codes Governing Diverse Gene Expression across Human Multiple TissuesCited by: 2
Author(s): Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Satoru Miyano
Software Mentions: 2
Published: over 14 years ago
10.1371/journal.pone.0143332
A Hominin Femur with Archaic Affinities from the Late Pleistocene of Southwest ChinaCited by: 13
Author(s): Darren Curnoe, Xueping Ji, Wu Liu, Bao Zhende, Paul S.C. Taçon, Liang Ren
Software Mentions: 2
Published: almost 9 years ago
10.1186/1471-2105-10-71
Gene set-based module discovery in the breast cancer transcriptomeCited by: 35
Author(s): Atsushi Niida, Andrew D. Smith, Seiya Imoto, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama
Software Mentions: 2
Published: over 15 years ago
10.1371/journal.pone.0139576
Evaluating Pillar Industry’s Transformation Capability: A Case Study of Two Chinese Steel-Based CitiesCited by: 10
Author(s): Zhidong Liu, Dora Marinová, Xiumei Guo, Yuan Gao
Software Mentions: 1
Published: about 9 years ago
10.1186/1758-2946-5-18
Predicting pK a values from EEM atomic chargesCited by: 14
Author(s): Radka Svobodová Vařeková, Stanislav Geidl, Crina-Maria Ionescu, Ondřej Skřehota, Tomáš Bouchal, David Sehnal, Ruben Abagyan, Jaroslav Koča
Software Mentions: 1
Published: over 11 years ago
10.1186/s13321-015-0099-x
AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like moleculesCited by: 50
Author(s): Crina-Maria Ionescu, David Sehnal, Francesco Luca Falginella, Purbaj Pant, Lukáš Pravda, Tomáš Bouchal, Radka Svobodová Vařeková, Stanislav Geidl, Jaroslav Koča
Software Mentions: 1
Published: about 9 years ago
10.1186/s13321-015-0107-1
High-quality and universal empirical atomic charges for chemoinformatics applicationsCited by: 28
Author(s): Stanislav Geidl, Tomáš Bouchal, Tomáš Raček, Radka Svobodová Vařeková, Václav Hejret, Aleš Křenek, Ruben Abagyan, Jaroslav Koča
Software Mentions: 1
Published: almost 9 years ago
10.1186/s13321-021-00528-w
Optimized SQE atomic charges for peptides accessible via a web applicationCited by: 2
Author(s): Ondřej Schindler, Tomáš Raček, Aleksandra Maršavelski, Jaroslav Koča, Karel Berka, Radka Svobodová
Software Mentions: 1
Published: over 3 years ago
10.1038/srep10207
Impact of dataset diversity on accuracy and sensitivity of parallel factor analysis model of dissolved organic matter fluorescence excitation-emission matrixCited by: 69
Author(s): Hui Yu, Heng Liang, Fangshu Qu, Zheng-shuang Han, Senlin Shao, Haiqing Chang
Software Mentions: 1
Published: over 9 years ago
10.1038/srep22371
Integrated Molecular Profiling of Human Gastric Cancer Identifies DDR2 as a Potential Regulator of Peritoneal DisseminationCited by: 56
Author(s): Junji Kurashige, Takanori Hasegawa, Atsushi Niida, Keizō Sugimachi, Niantao Deng, Kosuke Mima, Ryutaro Uchi, Genta Sawada, Yusuke Takahashi, Hidetoshi Eguchi, Masafumi Inomata, Seigo Kitano, Takeo Fukagawa, Mitsuru Sasako, Hiroki Sasaki, Shin Sasaki, Masaki Mori, Kazuyoshi Yanagihara, Hideo Baba, Satoru Miyano, Patrick Tan, Koshi Mimori
Software Mentions: 1
Published: over 8 years ago
10.1038/srep24801
Nearly diffraction-limited X-ray focusing with variable-numerical-aperture focusing optical system based on four deformable mirrorsCited by: 38
Author(s): Satoshi Matsuyama, Hiroki Nakamori, T. Goto, Takashi Kimura, Krishna P. Khakurel, Yoshiki Kohmura, Yasuhisa Sano, Makina Yabashi, Tetsuya Ishikawa, Yoshinori Nishino, Kazuto Yamauchi
Software Mentions: 1
Published: over 8 years ago
10.1007/s10895-020-02640-w
A Rapid Method to Measure Serum Retinol Concentrations in Japanese Black Cattle Using Multidimensional FluorescenceCited by: 7
Author(s): Yoshio Tamura, Hiroki Inoue, Satoshi Takemoto, Kazuo Hirano, Kazutoshi Miyaura
Software Mentions: 1
Published: about 4 years ago
10.3390/ijerph110606231
Patients’ Perspective of the Design of Provider-Patients Electronic Communication ServicesCited by: 4
Author(s): Petr Silhavy, Radek Šilhavý, Zdenka Prokopová
Software Mentions: 1
Published: over 10 years ago
10.1155/2013/547902
Current Stem Cell Delivery Methods for Myocardial RepairCited by: 59
Author(s): Calvin C. Sheng, Li Zhou, Jijun Hao
Software Mentions: 1
Published: almost 12 years ago
10.3390/molecules21101381
The Eighth Central European Conference “Chemistry towards Biology”: SnapshotCited by: 5
Author(s): András Perczel, Atanas G. Atanasov, Vladimı́r Sklenář, Jiří Nováček, Veronika Papoušková, Pavel Kadeřávek, Lukáš Žı́dek, Henryk Kozłowski, Joanna Wątły, Aleksandra Hecel, Paulina Kołkowska, Jaroslav Koča, Radka SvobodováVařeková, Lukáš Pravda, David Sehnal, Vladimír Horský, Stanislav Geidl, Ricardo D. Enriz, Pavel Matějka, Adéla Jeništová, Marcela Dendisová, A. Kokaislová, Volkmar Weissig, Mark Olsen, Aidan Coffey, Jude Ajuebor, Ruth Keary, Marta Sanz-Gaitero, Mark J. van Raaij, Olivia McAuliffe, Birgit Waltenberger, Andrei Mocan, Karel Šmejkal, Elke H. Heiss, Marc Diederich, Robert Musioł, Janez Košmrlj, Jarosław Polański, Josef Jampílek
Software Mentions: 1
Published: about 8 years ago