Packages with Software Mentions in Scientific Papers

Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees
Papers that mentioned: 16

Very Likely Science (85)

pypi: CROC

A package for calculating ROC curves and Concentrated ROC (CROC) curves.
Papers that mentioned: 16

Very Likely Science (80)

pypi: Sparks

A CLI tool that creates and updates project folders from templates to spark faster project bootstrapping.
Papers that mentioned: 16

Very Likely Science (65)

pypi: Student

student information package
Papers that mentioned: 16

Very Likely Science (65)

pypi: pymc3

Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano
Papers that mentioned: 16

Very Likely Science (100)

pypi: spp

My Simple Protocol Parser For Python, Built For Speed
Papers that mentioned: 16

Very Likely Science (65)

pypi: Toucan

A full stack Flask based framework that put structure in the file system. Features: Caching, Mailing, Storage, CSRF, recaptcha and more
Papers that mentioned: 16

Very Likely Science (65)

cran: spatialEco

Spatial Analysis and Modelling Utilities
Papers that mentioned: 16

Very Likely Science (100)

pypi: pcr

Python 3 Cryptography Toolkit
Papers that mentioned: 16

Very Likely Science (65)

pypi: Quotient

Divmod Quotient is a messaging platform developed as an Offering for Divmod Mantissa.
Papers that mentioned: 16

Likely Science (40)

pypi: Quasar

Quasar is a collection of data analysis toolboxes extending the Orange suite.
Papers that mentioned: 16

Very Likely Science (75)

cran: MKmisc

Miscellaneous Functions from M. Kohl
Papers that mentioned: 16

Very Likely Science (95)

cran: itertools

Iterator Tools
Papers that mentioned: 16

Very Likely Science (75)

cran: Exact

Unconditional Exact Test
Papers that mentioned: 16

Very Likely Science (75)

cran: parmigene

Parallel Mutual Information Estimation for Gene Network Reconstruction
Papers that mentioned: 16

Very Likely Science (100)

cran: DDM

Death Registration Coverage Estimation
Papers that mentioned: 16

Very Likely Science (75)

cran: adabag

Applies Multiclass AdaBoost.M1, SAMME and Bagging
Papers that mentioned: 16

Very Likely Science (75)

bioconductor: SPLINTER

Splice Interpreter of Transcripts
Papers that mentioned: 16

Very Likely Science (85)

cran: bayesplot

Plotting for Bayesian Models
Papers that mentioned: 16

Very Likely Science (93)

pypi: cmake

CMake is an open-source, cross-platform family of tools designed to build, test and package software
Papers that mentioned: 16

Very Likely Science (85)

cran: risksetROC

Riskset ROC Curve Estimation from Censored Survival Data
Papers that mentioned: 16

Very Likely Science (75)

cran: signal

Signal Processing
Papers that mentioned: 16

Very Likely Science (75)

cran: rlang

Functions for Base Types and Core R and 'Tidyverse' Features
Papers that mentioned: 16

Very Likely Science (100)

bioconductor: IsoformSwitchAnalyzeR

Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data
Papers that mentioned: 16

Very Likely Science (90)

pypi: ERP

Resource Planning System
Papers that mentioned: 16

Likely Science (40)

bioconductor: edge

Extraction of Differential Gene Expression
Papers that mentioned: 16

Very Likely Science (100)

cran: ggRandomForests

Visually Exploring Random Forests
Papers that mentioned: 16

Very Likely Science (75)

pypi: Jinja2

A very fast and expressive template engine.
Papers that mentioned: 16

Very Likely Science (100)

pypi: Pyro

distributed object middleware for Python (IPC/RPC), version 3.x
Papers that mentioned: 16

Very Likely Science (80)

pypi: bgzip

Utilities working with blocked gzip streams.
Papers that mentioned: 16

Very Likely Science (85)

cran: mlxR

Simulation of Longitudinal Data
Papers that mentioned: 16

Very Likely Science (93)

cran: bestNormalize

Normalizing Transformation Functions
Papers that mentioned: 16

Very Likely Science (100)

pypi: CCC

Cloud Custom Connections
Papers that mentioned: 16

Very Likely Science (65)

cran: RRPP

Linear Model Evaluation with Randomized Residuals in a Permutation Procedure
Papers that mentioned: 16

Very Likely Science (75)

pypi: ai

Ai lib.
Papers that mentioned: 16

Very Likely Science (67)

cran: pcr

Analyzing Real-Time Quantitative PCR Data
Papers that mentioned: 16

Very Likely Science (83)

pypi: Satellite

A user interface to ThunderStorm library for ElectroStatic-Discharge (ESD) Transmission Line Pulse (TLP) measurement-data analysis
Papers that mentioned: 16

Very Likely Science (75)

cran: RODBC

ODBC Database Access
Papers that mentioned: 16

Very Likely Science (83)

pypi: pytest

pytest: simple powerful testing with Python
Papers that mentioned: 16

Very Likely Science (80)

pypi: D2R

A new statistic for efficient detection of repetitive sequences
Papers that mentioned: 16

Very Likely Science (80)

pypi: exe

Papers that mentioned: 16

Very Likely Science (65)

pypi: signal

Send SMS messages via ADB and your Android phone. Comes with a CLI.
Papers that mentioned: 16

Likely Science (40)

pypi: tile

Syntax and config generator for tiling window managers
Papers that mentioned: 16

Very Likely Science (65)

cran: SLOPE

Sorted L1 Penalized Estimation
Papers that mentioned: 16

Very Likely Science (90)

pypi: fib

a GUI for fibnacci sequence
Papers that mentioned: 16

Very Likely Science (65)

pypi: igv

Jupyter extension for embedding the genome visualation igv.js in a notebook
Papers that mentioned: 16

Very Likely Science (100)

pypi: STEME

STEME: an accurate efficient motif finder for large data sets.
Papers that mentioned: 16

Very Likely Science (80)

pypi: pdp

Build fast data processing pipelines easily
Papers that mentioned: 16

Likely Science (40)

pypi: DuctApe

Analyzing and linking genomics and phenomics experiments
Papers that mentioned: 16

Very Likely Science (100)

cran: rosetta

Parallel Use of Statistical Packages in Teaching
Papers that mentioned: 16

Very Likely Science (85)

cran: spp

ChIP-Seq Processing Pipeline
Papers that mentioned: 16

Very Likely Science (75)

bioconductor: MultiAssayExperiment

Software for the integration of multi-omics experiments in Bioconductor
Papers that mentioned: 16

Very Likely Science (85)

pypi: autopilot

Helper to create and distribute Python packages
Papers that mentioned: 16

Likely Science (40)

pypi: circlator

circlator: a tool to circularise genome assemblies
Papers that mentioned: 16

Very Likely Science (100)

pypi: d

Documentation generation that won't make you tear your hair out.
Papers that mentioned: 16

Very Likely Science (65)

pypi: Mako

A super-fast templating language that borrows the best ideas from the existing templating languages.
Papers that mentioned: 16

Very Likely Science (65)

cran: coxphf

Cox Regression with Firth's Penalized Likelihood
Papers that mentioned: 16

Very Likely Science (93)

cran: mixdist

Finite Mixture Distribution Models
Papers that mentioned: 16

Very Likely Science (75)

bioconductor: MAIT

Statistical Analysis of Metabolomic Data
Papers that mentioned: 16

Very Likely Science (85)

pypi: hdbscan

Clustering based on density with variable density clusters
Papers that mentioned: 16

Very Likely Science (100)

cran: DOVE

Durability of Vaccine Efficacy
Papers that mentioned: 16

Very Likely Science (75)

cran: dabestr

Data Analysis using Bootstrap-Coupled Estimation
Papers that mentioned: 16

Very Likely Science (100)

pypi: claviger

Synchronizes remote SSH authorized_keys
Papers that mentioned: 16

Likely Science (40)

cran: gdm

Generalized Dissimilarity Modeling
Papers that mentioned: 16

Very Likely Science (100)

pypi: Safe

Is your password safe?
Papers that mentioned: 16

Very Likely Science (65)

bioconductor: PWMEnrich

PWM enrichment analysis
Papers that mentioned: 16

Very Likely Science (85)

cran: skimr

Compact and Flexible Summaries of Data
Papers that mentioned: 16

Very Likely Science (100)

pypi: SCM

Gui for EPSC model and inverse analysis
Papers that mentioned: 16

Very Likely Science (75)

bioconductor: genArise

Microarray Analysis tool
Papers that mentioned: 16

Very Likely Science (100)

cran: QuantPsyc

Quantitative Psychology Tools
Papers that mentioned: 16

Very Likely Science (75)

pypi: imgaug

Image augmentation library for deep neural networks
Papers that mentioned: 16

Very Likely Science (90)

pypi: AFE

Accelerometer Feature Extractor
Papers that mentioned: 16

Very Likely Science (100)

pypi: Shotgun

Shotgun package
Papers that mentioned: 16

Very Likely Science (65)

cran: dtw

Dynamic Time Warping Algorithms
Papers that mentioned: 16

Very Likely Science (85)

pypi: join

SQL-style joins for iterables.
Papers that mentioned: 16

Very Likely Science (65)

pypi: edge

Python bindings for Directed Edge's API
Papers that mentioned: 16

Very Likely Science (65)

cran: convevol

Analysis of Convergent Evolution
Papers that mentioned: 16

Very Likely Science (93)

pypi: greedy

Greedy (topological) coloring for GeoPandas
Papers that mentioned: 16

Very Likely Science (85)

pypi: dtw

Python DTW Module
Papers that mentioned: 16

Very Likely Science (100)

cran: limSolve

Solving Linear Inverse Models
Papers that mentioned: 16

Very Likely Science (75)

pypi: tk

TensorKit is a deep learning helper between Python and C++.
Papers that mentioned: 16

Very Likely Science (90)

cran: biwavelet

Conduct Univariate and Bivariate Wavelet Analyses
Papers that mentioned: 16

Very Likely Science (100)

cran: irlba

Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices
Papers that mentioned: 16

Very Likely Science (100)

cran: gkmSVM

Gapped-Kmer Support Vector Machine
Papers that mentioned: 15

Very Likely Science (83)

cran: scape

Statistical Catch-at-Age Plotting Environment
Papers that mentioned: 15

Very Likely Science (85)

cran: psycho

Efficient and Publishing-Oriented Workflow for Psychological Science
Papers that mentioned: 15

Very Likely Science (100)

pypi: DIRAC

DIRAC is an interware, meaning a software framework for distributed computing.
Papers that mentioned: 15

Very Likely Science (90)

pypi: connectivity

Library containing Server and Client for transferring messages and files via TCP
Papers that mentioned: 15

Very Likely Science (65)

cran: Quartet

Comparison of Phylogenetic Trees Using Quartet and Split Measures
Papers that mentioned: 15

Very Likely Science (100)

cran: rEDM

Empirical Dynamic Modeling ('EDM')
Papers that mentioned: 15

Very Likely Science (85)

cran: shinyBS

Twitter Bootstrap Components for Shiny
Papers that mentioned: 15

Very Likely Science (70)

pypi: lda

Topic modeling with latent Dirichlet allocation
Papers that mentioned: 15

Very Likely Science (90)