Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

pypi: Satellite
A user interface to ThunderStorm library for ElectroStatic-Discharge (ESD) Transmission Line Pulse (TLP) measurement-data analysis
Papers that mentioned: 16
cran: dabestr
Data Analysis using Bootstrap-Coupled Estimation
Papers that mentioned: 16
pypi: dtw
Python DTW Module
Papers that mentioned: 16
pypi: Safe
Is your password safe?
Papers that mentioned: 16
cran: QTLRel
Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees
Papers that mentioned: 16
cran: coxphf
Cox Regression with Firth's Penalized Likelihood
Papers that mentioned: 16
pypi: SCM
Gui for EPSC model and inverse analysis
Papers that mentioned: 16
cran: convevol
Analysis of Convergent Evolution
Papers that mentioned: 16
pypi: tk
TensorKit is a deep learning helper between Python and C++.
Papers that mentioned: 16
pypi: greedy
Greedy (topological) coloring for GeoPandas
Papers that mentioned: 16
cran: treedater
Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation
Papers that mentioned: 16
pypi: D2R
A new statistic for efficient detection of repetitive sequences
Papers that mentioned: 16
pypi: forest
Forest
Papers that mentioned: 16
bioconductor: genArise
Microarray Analysis tool
Papers that mentioned: 16
bioconductor: snapCGH
Segmentation, normalisation and processing of aCGH data
Papers that mentioned: 16
bioconductor: SLqPCR
Functions for analysis of real-time quantitative PCR data at SIRS-Lab GmbH
Papers that mentioned: 16
pypi: pdp
Build fast data processing pipelines easily
Papers that mentioned: 16
pypi: pcr
Python 3 Cryptography Toolkit
Papers that mentioned: 16
pypi: Jinja2
A very fast and expressive template engine.
Papers that mentioned: 16
cran: RRPP
Linear Model Evaluation with Randomized Residuals in a Permutation Procedure
Papers that mentioned: 16
pypi: join
SQL-style joins for iterables.
Papers that mentioned: 16
cran: rosetta
Parallel Use of Statistical Packages in Teaching
Papers that mentioned: 16
pypi: pytest
pytest: simple powerful testing with Python
Papers that mentioned: 16
pypi: rosetta
Tools, wrappers, etc... for data science with a concentration on text processing
Papers that mentioned: 16
pypi: Pyro
distributed object middleware for Python (IPC/RPC), version 3.x
Papers that mentioned: 16
cran: RODBC
ODBC Database Access
Papers that mentioned: 16
cran: ggRandomForests
Visually Exploring Random Forests
Papers that mentioned: 16
cran: risksetROC
Riskset ROC Curve Estimation from Censored Survival Data
Papers that mentioned: 16
pypi: STEME
STEME: an accurate efficient motif finder for large data sets.
Papers that mentioned: 16
cran: spatialEco
Spatial Analysis and Modelling Utilities
Papers that mentioned: 16
bioconductor: PWMEnrich
PWM enrichment analysis
Papers that mentioned: 16
pypi: fib
a GUI for fibnacci sequence
Papers that mentioned: 16
cran: SLOPE
Sorted L1 Penalized Estimation
Papers that mentioned: 16
pypi: Quasar
Quasar is a collection of data analysis toolboxes extending the Orange suite.
Papers that mentioned: 16
cran: bayesplot
Plotting for Bayesian Models
Papers that mentioned: 16
cran: AUCRF
Variable Selection with Random Forest and the Area Under the Curve
Papers that mentioned: 16
pypi: signal
Send SMS messages via ADB and your Android phone. Comes with a CLI.
Papers that mentioned: 16
pypi: tile
Syntax and config generator for tiling window managers
Papers that mentioned: 16
pypi: Quotient
Divmod Quotient is a messaging platform developed as an Offering for Divmod Mantissa.
Papers that mentioned: 16
cran: linprog
Linear Programming / Optimization
Papers that mentioned: 16
cran: limSolve
Solving Linear Inverse Models
Papers that mentioned: 16
bioconductor: AneuFinder
Analysis of Copy Number Variation in Single-Cell-Sequencing Data
Papers that mentioned: 16
cran: skimr
Compact and Flexible Summaries of Data
Papers that mentioned: 16
pypi: summit
Tools for optimizing chemical processes
Papers that mentioned: 16
pypi: Shotgun
Shotgun package
Papers that mentioned: 16
cran: spp
ChIP-Seq Processing Pipeline
Papers that mentioned: 16
cran: QuantPsyc
Quantitative Psychology Tools
Papers that mentioned: 16
pypi: bgzip
Utilities working with blocked gzip streams.
Papers that mentioned: 16
pypi: Toucan
A full stack Flask based framework that put structure in the file system. Features: Caching, Mailing, Storage, CSRF, recaptcha and more
Papers that mentioned: 16
cran: adabag
Applies Multiclass AdaBoost.M1, SAMME and Bagging
Papers that mentioned: 16
pypi: igv
Jupyter extension for embedding the genome visualation igv.js in a notebook
Papers that mentioned: 16
pypi: j5
j5 Robotics Framework
Papers that mentioned: 16
pypi: spp
My Simple Protocol Parser For Python, Built For Speed
Papers that mentioned: 16
cran: muma
Metabolomics Univariate and Multivariate Analysis
Papers that mentioned: 16
pypi: ERP
Resource Planning System
Papers that mentioned: 16
cran: signal
Signal Processing
Papers that mentioned: 16
cran: rlang
Functions for Base Types and Core R and 'Tidyverse' Features
Papers that mentioned: 16
pypi: cmake
CMake is an open-source, cross-platform family of tools designed to build, test and package software
Papers that mentioned: 16
cran: ggpmisc
Miscellaneous Extensions to 'ggplot2'
Papers that mentioned: 16
pypi: d
Documentation generation that won't make you tear your hair out.
Papers that mentioned: 16
bioconductor: edge
Extraction of Differential Gene Expression
Papers that mentioned: 16
bioconductor: MultiAssayExperiment
Software for the integration of multi-omics experiments in Bioconductor
Papers that mentioned: 16
pypi: claviger
Synchronizes remote SSH authorized_keys
Papers that mentioned: 16
pypi: pymc3
Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano
Papers that mentioned: 16
pypi: circlator
circlator: a tool to circularise genome assemblies
Papers that mentioned: 16
cran: MKmisc
Miscellaneous Functions from M. Kohl
Papers that mentioned: 16
pypi: exe

Papers that mentioned: 16
pypi: CROC
A package for calculating ROC curves and Concentrated ROC (CROC) curves.
Papers that mentioned: 16
pypi: imgaug
Image augmentation library for deep neural networks
Papers that mentioned: 16
cran: exact2x2
Exact Tests and Confidence Intervals for 2x2 Tables
Papers that mentioned: 16
cran: Exact
Unconditional Exact Test
Papers that mentioned: 16
cran: mlxR
Simulation of Longitudinal Data
Papers that mentioned: 16
cran: ERP
Significance Analysis of Event-Related Potentials Data
Papers that mentioned: 16
cran: candisc
Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
Papers that mentioned: 16
cran: mlma
Multilevel Mediation Analysis
Papers that mentioned: 16
cran: gdm
Generalized Dissimilarity Modeling
Papers that mentioned: 16
pypi: hdbscan
Clustering based on density with variable density clusters
Papers that mentioned: 16
pypi: Sparks
A CLI tool that creates and updates project folders from templates to spark faster project bootstrapping.
Papers that mentioned: 16
pypi: ai
Ai lib.
Papers that mentioned: 16
cran: mixdist
Finite Mixture Distribution Models
Papers that mentioned: 16
pypi: CasFinder
A small example package
Papers that mentioned: 16
cran: itertools
Iterator Tools
Papers that mentioned: 16
pypi: Student
student information package
Papers that mentioned: 16
pypi: AFE
Accelerometer Feature Extractor
Papers that mentioned: 16
pypi: Clarify
A library for scraping and parsing election results from jurisdictions using Clarity elections systems.
Papers that mentioned: 16
cran: pdp
Partial Dependence Plots
Papers that mentioned: 16
cran: pcr
Analyzing Real-Time Quantitative PCR Data
Papers that mentioned: 16
cran: parmigene
Parallel Mutual Information Estimation for Gene Network Reconstruction
Papers that mentioned: 16
pypi: DAG
An implementation of a directed acyclic graph.
Papers that mentioned: 16
pypi: Mako
A super-fast templating language that borrows the best ideas from the existing templating languages.
Papers that mentioned: 16
pypi: edge
Python bindings for Directed Edge's API
Papers that mentioned: 16
pypi: a
Python Distribution Utilities
Papers that mentioned: 15
cran: DTK
Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes
Papers that mentioned: 15
cran: box
Write Reusable, Composable and Modular R Code
Papers that mentioned: 15
cran: metap
Meta-Analysis of Significance Values
Papers that mentioned: 15
cran: drgee
Doubly Robust Generalized Estimating Equations
Papers that mentioned: 15
cran: metaMA
Meta-Analysis for MicroArrays
Papers that mentioned: 15
pypi: 16

Papers that mentioned: 15
cran: mcr
Method Comparison Regression
Papers that mentioned: 15
bioconductor: SCnorm
Normalization of single cell RNA-seq data
Papers that mentioned: 15