Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: PWMEnrich
https://packages.ecosyste.ms/registries/bioconductor.org/packages/PWMEnrich
PWM enrichment analysis
1 version
Latest release: about 1 year ago
2 dependent packages
36,970 downloads total
Papers Mentioning PWMEnrich 16
10.1007/s00401-020-02224-9
Altered DNA methylation profiles in blood from patients with sporadic Creutzfeldt–Jakob diseaseCited by: 14
Author(s): Luke C. Dabin, Fernando Guntoro, Tracy Campbell, Tony Bélicard, Adam R. Smith, Rebecca G. Smith, Rachel Raybould, Jonathan M. Schott, Katie Lunnon, Peter Sarkies, John Collinge, Simon Mead, Emmanuelle Viré
Software Mentions: 10
Published: over 4 years ago
10.7554/eLife.64919
Tissue-autonomous immune response regulates stress signaling during hypertrophyCited by: 11
Author(s): Robert Krautz, Dilan Khalili, Ulrich Theopold
Software Mentions: 8
Published: almost 4 years ago
10.7554/eLife.31683
Transcription-factor-dependent enhancer transcription defines a gene regulatory network for cardiac rhythmCited by: 36
Author(s): Xinan Yang, Rangarajan D. Nadadur, Catharina R.E. Hilvering, Valerio Bianchi, Michael S. Werner, Stefan R. Mazurek, Margaret Gadek, Karen Shen, Joseph D. Goldman, Leonid Tyan, Jenna C. Bekeny, Johnathon M Hall, Nutishia Lee, Carlos Perez-Cervantes, Ozanna Burnicka-Turek, Kenneth D. Poss, Christopher R. Weber, Wouter de Laat, Alexander J. Ruthenburg, Ivan P. Moskowitz
Software Mentions: 5
Published: almost 7 years ago
10.1186/s13059-019-1721-4
Chromatin accessibility plays a key role in selective targeting of Hox proteinsCited by: 35
Author(s): Damiano Porcelli, Bettina Fischer, Steven Russell, Robert A. White
Software Mentions: 5
Published: over 5 years ago
10.1186/s40164-018-0123-8
Methylome of human senescent hematopoietic progenitorsCited by: 5
Author(s): Stephen Capone, Anthony Colombo, Benjamin K. Johnson, Tim Triche, Giridharan Ramsingh
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pone.0177739
Transcriptome profiling revealed novel transcriptional regulators in maize responses to Ostrinia furnacalis and jasmonic acidCited by: 15
Author(s): Wang Hai, Shengyan Li, Shouzhen Teng, Haisheng Liang, Hongjia Xin, Hongjiang Gao, Dafang Huang, Zhihong Lang
Software Mentions: 4
Published: over 7 years ago
10.1186/s12864-017-3621-x
Widespread promoter methylation of synaptic plasticity genes in long-term potentiation in the adult brain in vivoCited by: 22
Author(s): Jesper L.V. Mååg, Dominik C. Kaczorowski, Debabrata Panja, Timothy J. Peters, Clive R. Bramham, Karin Wibrand, Marcel E. Dinger
Software Mentions: 3
Published: almost 8 years ago
10.1371/journal.pgen.1007096
Role of co-repressor genomic landscapes in shaping the Notch responseCited by: 13
Author(s): Stephen Kk Chan, Gustavo Cerda-Moya, Robert Stojnic, Kat Millen, Bettina Fischer, Silvie Fexová, Lenka Skalska, Maria J. Gomez-Lamarca, Zoe Pillidge, Steven Russell, Sarah Bray
Software Mentions: 3
Published: about 7 years ago
10.1186/s13072-015-0049-x
Roles of cofactors and chromatin accessibility in Hox protein target specificityCited by: 46
Author(s): Ching Yew Beh, Sherif El‐Sharnouby, Aikaterini Chatzipli, Steven Russell, Siew Woh Choo, Robert A. White
Software Mentions: 3
Published: almost 9 years ago
10.3389/fgene.2018.00610
Prenatal Alcohol Exposure: Profiling Developmental DNA Methylation Patterns in Central and Peripheral TissuesCited by: 26
Author(s): Alexandre A. Lussier, Tamara S. Bodnar, Matthew Mingay, Alexandre Morin, Martin Hirst, Michæl S. Kobor, Joanne Weinberg
Software Mentions: 3
Published: about 6 years ago
10.7554/eLife.24265
Transcription factor TFCP2L1 patterns cells in the mouse kidney collecting ductsCited by: 55
Author(s): Max Werth, Kai M. Schmidt‐Ott, Thomas Leete, Andong Qiu, Christian Hinze, Mélanie Viltard, Neal Paragas, Carrie J. Shawber, Wenqiang Yu, Peter Lee, Xia Chen, Abby Sarkar, Weiyi Mu, Alexander Rittenberg, Chyuan Sheng Lin, Jan Kitajewski, Qais Al‐Awqati, Jonathan Barasch
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0095176
Systematic Identification of Cell-Wall Related Genes in Populus Based on Analysis of Functional Modules in Co-Expression NetworkCited by: 23
Author(s): Bin Cai, Cheng-Hui Li, Jian Huang
Software Mentions: 2
Published: over 10 years ago
10.1186/s12864-016-2593-6
Regulatory modules controlling early shade avoidance response in maize seedlingsCited by: 41
Author(s): Hai Wang, Guangxia Wu, Binbin Zhao, Baobao Wang, Zhihong Lang, Zhang Chunyi, Haiyang Wang
Software Mentions: 2
Published: over 8 years ago
10.1186/s13073-016-0345-5
Characterisation of the global transcriptional response to heat shock and the impact of individual genetic variationCited by: 3
Author(s): Peter Humburg, Narelle J. Maugeri, Wanseon Lee, Bert Mohr, Julian C. Knight
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.ppat.1007737
A streptococcal Fic domain-containing protein disrupts blood-brain barrier integrity by activating moesin in endothelial cellsCited by: 14
Author(s): Zhe Ma, Jie Peng, Dandan Yu, Joseph S. Park, Huixing Lin, Bin Xu, Lu Chen, Hongjie Fan, Matthew K. Waldor
Software Mentions: 1
Published: over 5 years ago
10.1038/srep34962
FOXA and master transcription factors recruit Mediator and Cohesin to the core transcriptional regulatory circuitry of cancer cellsCited by: 36
Author(s): Michèle Fournier, Gaëlle Bourriquen, Fabien C. Lamaze, Maxime Côté, Éric Fournier, Charles Joly-Beauparlant, Vicky Caron, Stéphane Gobeil, Arnaud Droit, Steve Bilodeau
Software Mentions: 1
Published: about 8 years ago