Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.64919

https://doi.org/10.7554/eLife.64919

Cited by: 11
Author(s): Robert Krautz, Dilan Khalili, Ulrich Theopold
Published: over 3 years ago

Software Mentions 8

bioconductor: AnnotationDbi
Manipulation of SQLite-based annotations in Bioconductor
Papers that mentioned: 73
bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: Biostrings
Efficient manipulation of biological strings
Papers that mentioned: 220
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
bioconductor: PWMEnrich
PWM enrichment analysis
Papers that mentioned: 16
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Papers that mentioned: 319
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307
pypi: Zen
A simple way to access the ZenDesk v2 API via Python.
Papers that mentioned: 2,767