Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: AneuFinder
https://packages.ecosyste.ms/registries/bioconductor.org/packages/AneuFinder
Analysis of Copy Number Variation in Single-Cell-Sequencing Data
1 version
Latest release: 7 months ago
15,155 downloads total
Papers Mentioning AneuFinder 16
10.3389/fgene.2020.505441
SCCNV: A Software Tool for Identifying Copy Number Variation From Single-Cell Whole-Genome SequencingCited by: 5
Author(s): Xiao Dong, Lei Zhang, Xiaoxiao Hao, Tao Wang, Jan Vijg
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pcbi.1008012
Assessing the performance of methods for copy number aberration detection from single-cell DNA sequencing dataCited by: 24
Author(s): Xian Mallory, Mohammadamin Edrisi, Nicholas E. Navin, Luay Nakhleh
Software Mentions: 5
Published: almost 4 years ago
10.1186/s13059-020-02119-8
Methods for copy number aberration detection from single-cell DNA-sequencing dataCited by: 63
Author(s): Xian Mallory, Mohammadamin Edrisi, Nicholas E. Navin, Luay Nakhleh
Software Mentions: 4
Published: almost 4 years ago
10.1002/1878-0261.12573
Premature mitotic entry induced by ATR inhibition potentiates olaparib inhibition‐mediated genomic instability, inflammatory signaling, and cytotoxicity in BRCA2‐deficient cancer cellsCited by: 55
Author(s): Pepijn M Schoonen, Yannick P Kok, Elles Wierenga, Björn Bakker, Floris Foijer, Diana C. J. Spierings, Marcel A.T.M. van Vugt
Software Mentions: 4
Published: over 4 years ago
10.1186/s13059-016-0971-7
Single-cell sequencing reveals karyotype heterogeneity in murine and human malignanciesCited by: 156
Author(s): Björn Bakker, Aaron Taudt, Mirjam E. Belderbos, David Porubský, Diana C.J. Spierings, Tristan de Jong, Nancy Halsema, Hinke G. Kazemier, Karina Hoekstra-Wakker, Allan Bradley, Eveline S.J.M. de Bont, Anke van den Berg, Victor Guryev, Peter M Lansdorp, Maria Colomé-Tatché, Floris Foijer
Software Mentions: 3
Published: almost 8 years ago
10.1002/cjp2.172
Loss of <scp><i>NF2</i></scp> defines a genetic subgroup of <scp>non‐<i>FOS</i></scp>‐rearranged osteoblastomaCited by: 9
Author(s): Karim H. Saba, Louise Cornmark, Jakob Hofvander, Linda Magnusson, Jenny Nilsson, Hilda van den Bos, Diana C. J. Spierings, Floris Foijer, Johan Staaf, Otte Brosjö, Vaiyapuri P. Sumathi, Suk Wai Lam, Károly Szuhai, Judith V.M.G. Bovée, Michal Kováč, Daniel Baumhoer, Emelie Styring, Karolin Hansén Nord
Software Mentions: 3
Published: almost 4 years ago
10.1016/j.celrep.2018.05.047
Non-random Mis-segregation of Human ChromosomesCited by: 69
Author(s): Joseph T Worrall, Naoka Tamura, Alice Mazzagatti, Nadeem Shaikh, Tineke van Lingen, Björn Bakker, Diana C.J. Spierings, Elina Vladimirou, Floris Foijer, Sarah E. McClelland
Software Mentions: 2
Published: almost 6 years ago
10.1016/j.ccell.2019.02.004
DNA Replication Vulnerabilities Render Ovarian Cancer Cells Sensitive to Poly(ADP-Ribose) Glycohydrolase InhibitorsCited by: 77
Author(s): Nisha Pillay, Anthony Tighe, Louisa Nelson, Samantha Littler, Camilla Coulson-Gilmer, Nourdine Bah, Anya Golder, Björn Bakker, Diana C. J. Spierings, Dominic I. James, Kate Smith, Allan M. Jordan, Robert D. Morgan, Donald Ogilvie, Floris Foijer, Dean A. Jackson, Stephen S. Taylor
Software Mentions: 2
Published: about 5 years ago
10.1186/s12859-019-2842-1
Aneuvis: web-based exploration of numerical chromosomal variation in single cellsCited by: 1
Author(s): Daniel G. Piqué, Grasiella Andriani, Elaine C. Maggi, Stephanie M. Zimmerman, John M. Greally, Cristina Montagna, Jessica C. Mar
Software Mentions: 2
Published: almost 5 years ago
10.1016/j.celrep.2018.09.060
The p38α Stress Kinase Suppresses Aneuploidy Tolerance by Inhibiting Hif-1αCited by: 26
Author(s): Susana Simões-Sousa, Samantha Littler, Sarah L. Thompson, Paul Minshall, Helen J. Whalley, Björn Bakker, Klaudyna Bełkot, Daniela Moralli, Daniel Bronder, Anthony Tighe, Diana C.J. Spierings, Nourdine Bah, Joshua Graham, Louisa Nelson, Catherine Green, Floris Foijer, Paul A. Townsend, Stephen S. Taylor
Software Mentions: 1
Published: over 5 years ago
10.1186/s13059-016-0976-2
Single-cell whole genome sequencing reveals no evidence for common aneuploidy in normal and Alzheimer’s disease neuronsCited by: 109
Author(s): Hilda van den Bos, Diana C.J. Spierings, Aaron Taudt, Björn Bakker, David Porubský, Ester Falconer, Carolina Novoa, Nancy Halsema, Hinke G. Kazemier, Karina Hoekstra-Wakker, Victor Guryev, Wilfred F. A. den Dunnen, Floris Foijer, Maria Colomé-Tatché, Hendrikus Boddeke, Peter M. Landsdorp
Software Mentions: 1
Published: almost 8 years ago
10.3390/cancers12040896
Detection of Circulating Tumor Cells in the Diagnostic Leukapheresis Product of Non-Small-Cell Lung Cancer Patients Comparing CellSearch® and ISETCited by: 29
Author(s): Menno Tamminga, Kiki Andree, T Jeroen N Hiltermann, Maximilien Jayat, Ed Schuuring, Hilda van den Bos, Diana C.J. Spierings, Peter M Lansdorp, Wim Timens, Leon W.M.M. Terstappen, Harry J.M. Groen
Software Mentions: 1
Published: about 4 years ago
10.1186/s13039-017-0320-x
Abstracts from the 3rd Conference on Aneuploidy and Cancer: Clinical and Experimental AspectsCited by: 0
Author(s): Athel Cornish‐Bowden, Athel Cornish‐Bowden, David Rasnick, Henry H.Q. Heng, Steven D. Horne, Batoul Y. Abdallah, Lei Guo, Christine J. Ye, Mathew Bloomfield, Mark Vincent, C. Marcelo Aldaz, Jenny Karlsson, Anders Valind, Caroline Jansson, David Gisselsson, Jennifer A. Marshall Graves, Aleksei A. Stepanenko, S. V. Andreieva, Kateryna Korets, Dmytro Mykytenko, Nataliya Huleyuk, Vladimir P. Baklaushev, Oksana A. Kovaleva, В. П. Чехонин, Yegor S. Vassetzky, Stanislav Avdieiev, Björn Bakker, Aaron Taudt, Mirjam E. Belderbos, David Porubský, Diana C.J. Spierings, Tristan de Jong, Nancy Halsema, Hinke G. Kazemier, Karina Hoekstra-Wakker, Allan Bradley, Eveline S.J.M. de Bont, Anke van den Berg, Victor Guryev, Peter M. Lansdorp, Maria Colomé Tatché, Floris Foijer, Thomas Liehr, Nicolaas C Baudoin, Joshua M. Nicholson, Kimberly Soto, Isabel Quintanilla, Jordi Camps, Daniela Cimini, Milena Dürrbaum, Neysan Donnelly, Verena Passerini, Christian Kruse, B. Habermann, Z. Storchová, Daniele Mandrioli, Fiorella Belpoggi, Ellen K. Silbergeld, Melissa J. Perry, Rolf I. Skotheim, Marthe Løvf, Bjarne Johannessen, Andreas Hoff, Shen Zhao, Jonas M. SveeStrømme, Anita Sveen, Ragnhild A. Lothe, R. Hehlmann, Astghik Voskanyan, Alice Fabarius, Alfred Böcking, Stefan Biesterfeld, Leonid Berynskyy, C. Börgermann, Rainer Engers, Josef Dietz, Alfons Fritz, Naveen Thakur Dr. Manjit Sehgal, Jitka Večeřová, B. Stojkovicz, Huiping Ding, N. Clifford Page, C. Y. Tye, S. Bhattacharya, Jun‐Ping Xu, G. Stein, Justin J. Stein, Ronald Berezney, Xue Gong, Sarah Grasedieck, Julian Swoboda, Frank G. Rücker, Lars Bullinger, Jonathan R. Pollack, Fani-Marlen Roumelioti, Maria Chiourea, Christina Raftopoulou, Sarantis Gagos, Peter H. Duesberg, Mat Bloomfield, Sunyoung Hwang, Hans Tobias Gustafsson, Ciara K. O’Sullivan, Aracelli Acevedo-Colina, Xinhe Huang, Christian Klose, Andrej Schevchenko, Robert C. Dickson, Paola Cavaliere, Noah Dephoure, Eduardo M. Torres, Martha R. Stampfer, Lukáš Vrba, Mark A. LaBarge, Bernard W. Futscher, James C. Garbe, Yihong Zhou, Andrew Trinh, Yihong Zhou, Michelle A. Digman
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41388-018-0470-2
TPX2/Aurora kinase A signaling as a potential therapeutic target in genomically unstable cancer cellsCited by: 39
Author(s): Stephanie E van Gijn, Elles Wierenga, Nathalie van den Tempel, Yannick P Kok, Anne Margriet Heijink, Diana C.J. Spierings, Floris Foijer, Marcel A.T.M. van Vugt, Rudolf S.N. Fehrmann
Software Mentions: 1
Published: over 5 years ago
10.7554/eLife.20873
Deletion of the MAD2L1 spindle assembly checkpoint gene is tolerated in mouse models of acute T-cell lymphoma and hepatocellular carcinomaCited by: 54
Author(s): Floris Foijer, Lee A. Albacker, Björn Bakker, Diana C.J. Spierings, Ying Yue, Stephanie Z. Xie, Stephanie H. Davis, Annegret Lutum-Jehle, Darin Takemoto, Brian Hare, Brinley F. Furey, Roderick T. Bronson, Peter M Lansdorp, Allan Bradley, Peter K. Sorger
Software Mentions: 1
Published: about 7 years ago
10.26508/lsa.201900499
Altering microtubule dynamics is synergistically toxic with spindle assembly checkpoint inhibitionCited by: 13
Author(s): Klaske M. Schukken, Yu‐Chih Lin, Petra L. Bakker, Michaël Schubert, Stephanie F. Preuss, Judith E Simon, Hilda van den Bos, Zuzana Storchová, Maria Colomé-Tatché, Holger Bastians, Diana C. J. Spierings, Floris Foijer
Software Mentions: 1
Published: over 4 years ago