Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: limSolve

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/limSolve

Solving Linear Inverse Models
15 versions
Latest release: about 1 year ago
35 dependent packages
5,827 downloads last month

Papers Mentioning limSolve 16

Two-Stage, In Silico Deconvolution of the Lymphocyte Compartment of the Peripheral Whole Blood Transcriptome in the Context of Acute Kidney Allograft Rejection
Cited by: 18
Author(s): Casey P. Shannon, Robert Balshaw, Raymond T. Ng, J. Wilson-McManus, Paul Keown, Robert McMaster, Bruce M. McManus, David Landsberg, Nicole M. Isbel, Greg Knoll, Scott J. Tebbutt
Software Mentions: 9
Published: over 10 years ago

10.1111/1462-2920.14870

Microbial signatures of protected and impacted Northern Caribbean reefs: changes from Cuba to the Florida Keys
Cited by: 23
Author(s): Laura Weber, Patricia González‐Díaz, Maickel Armenteros, Víctor Manuel Ferrer, Fernando Bretos, Erich Bartels, Alyson E. Santoro, Amy Apprill
Software Mentions: 9
Published: almost 5 years ago

10.3389/fmicb.2021.660719

Changes in the Community Structure of Under-Ice and Open-Water Microbiomes in Urban Lakes Exposed to Road Salts
Cited by: 14
Author(s): Isabelle B. Fournier, Connie Lovejoy, Warwick F. Vincent
Software Mentions: 7
Published: over 3 years ago

10.1016/j.celrep.2019.04.098

The Genomic and Immune Landscapes of Lethal Metastatic Breast Cancer
Cited by: 85
Author(s): Leticia De Mattos-Arruda, Stephen‐John Sammut, Edith Ross, Rachael Bashford-Rogers, Erez Greenstein, Havell Markus, Sandro Morganella, Yvonne H. F. Teng, Yosef E. Maruvka, Bernard Pereira, Oscar M. Rueda, Suet-Feung Chin, Tania Contente-Cuomo, Regina Mayor, Alexandra Arias, H. Raza Ali, Wei Cope, Daniel Guimarães Tiezzi, Aliakbar Dariush, Tauanne Dias Amarante, Dan Reshef, Nikaoly Ciriaco, Elena Martinez-Saez, Vicente Peg, Santiago Ramón y Cajal, Javier Cortés, George S. Vassiliou, Gad Getz, Serena Nik-Zainal, Muhammed Murtaza, Nir Friedman, Florian Markowetz, Joan Seoane, Carlos Caldas
Software Mentions: 5
Published: over 5 years ago

10.1186/s13073-019-0638-6

Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data
Cited by: 628
Author(s): Francesca Finotello, Clemens Mayer, Christina Plattner, Gerhard Laschober, Dietmar Rieder, Hubert Hackl, Anne Krogsdam, Zuzana Loncová, Wilfried Posch, Doris Wilflingseder, Sieghart Sopper, Marieke E. Ijsselsteijn, Thomas P. Brouwer, Douglas B. Johnson, Yaomin Xu, Yu Wang, Melinda E. Sanders, Mónica Valéria Estrada, Paula I. Ericsson-Gonzalez, Pornpimol Charoentong, Justin M. Balko, Noel F.C.C. de Miranda, Zlatko Trajanoski
Software Mentions: 4
Published: over 5 years ago

10.1111/1751-7915.12747

Electro-fermentation triggering population selection in mixed-culture glycerol fermentation
Cited by: 35
Author(s): Roman Moscoviz, Eric Trably, Nicolas Bernet
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2019.00288

Web-gLV: A Web Based Platform for Lotka-Volterra Based Modeling and Simulation of Microbial Populations
Cited by: 24
Author(s): Bhusan K. Kuntal, Chetan Gadgil, Sharmila S. Mande
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-016-0947-7

Pooling across cells to normalize single-cell RNA sequencing data with many zero counts
Cited by: 858
Author(s): Aaron T. L. Lun, Karsten Bach, John C. Marioni
Software Mentions: 4
Published: over 8 years ago

10.1186/1471-2105-14-204

Deconvolution of gene expression from cell populations across the C. eleganslineage
Cited by: 2
Author(s): Joshua T. Burdick, John I. Murray
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0203687

Computational prediction of changes in brain metabolic fluxes during Parkinson’s disease from mRNA expression
Cited by: 10
Author(s): Farahaniza Supandi, Hans van Beek
Software Mentions: 3
Published: about 6 years ago

10.3389/fgene.2020.597482

Heat Shock Improves Random Spore Analysis in Diverse Strains of Saccharomyces cerevisiae
Cited by: 4
Author(s): Molly K. Burke, Kaitlin M. McHugh, Ian C. Kutch
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-015-1394-7

Mitochondrial DNA and the Y chromosome suggest the settlement of Madagascar by Indonesian sea nomad populations
Cited by: 61
Author(s): Pradiptajati Kusuma, Murray P. Cox, Denis Pierron, Harilanto Razafindrazaka, Nicolas Brucato, Laure Tonasso, Helena Suryadi, Thierry Letellier, Herawati Sudoyo, François‐Xavier Ricaut
Software Mentions: 2
Published: over 9 years ago

10.1002/2014WR016194

Sensitivity of fluvial sediment source apportionment to mixing model assumptions: A Bayesian model comparison
Cited by: 56
Author(s): Richard J. Cooper, Tobias Krueger, Kevin M. Hiscock, Barry G. Rawlins
Software Mentions: 1
Published: about 10 years ago

10.1093/biomet/asy015

Covariate association eliminating weights: a unified weighting framework for causal effect estimation
Cited by: 32
Author(s): Sean Yiu, Li Su
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0176381

Interaction between birds and macrofauna within food webs of six intertidal habitats of the Wadden Sea
Cited by: 14
Author(s): Sabine Horn, Camille de la Vega, Ragnhild Asmus, Philipp Schwemmer, Leonie Enners, Stefan Garthe, Kirsten Binder, Harald Asmus
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0199123

A new approach for incorporating 15N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling
Cited by: 11
Author(s): Michael R. Stukel, Moira Décima, Thomas B Kelly
Software Mentions: 1
Published: over 6 years ago