Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: edge

https://packages.ecosyste.ms/registries/bioconductor.org/packages/edge

Extraction of Differential Gene Expression
1 version
Latest release: about 1 year ago
20,430 downloads total

Papers Mentioning edge 16

mAPKL: R/ Bioconductor package for detecting gene exemplars and revealing their characteristics
Cited by: 3
Author(s): Αλέξανδρος Σακελλαρίου, George M. Spyrou
Software Mentions: 15
Published: about 9 years ago

10.3389/fmicb.2021.666558

The Transcriptional Response of Soil Bacteria to Long-Term Warming and Short-Term Seasonal Fluctuations in a Terrestrial Forest
Cited by: 6
Author(s): Priyanka Chowdhury, Stefan Golas, Lauren Alteio, Joshua T. E. Stevens, Andrew F. Billings, Jeffrey L. Blanchard, Jerry M. Melillo, Kristen M. DeAngelis
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pone.0147426

Transcriptomic Profile of Whole Blood Cells from Elderly Subjects Fed Probiotic Bacteria Lactobacillus rhamnosus GG ATCC 53103 (LGG) in a Phase I Open Label Study
Cited by: 16
Author(s): Gloria Solano‐Aguilar, Aleksey Molokin, Christine Botelho, Anne‐Maria Fiorino, Bryan T. Vinyard, Robert Li, Celine Chen, Joseph F. Urban, Harry Dawson, Irina Andreyeva, Miriam Haverkamp, Patricia L. Hibberd
Software Mentions: 6
Published: over 8 years ago

10.1186/s13148-020-00888-4

Alternative methylation of intron motifs is associated with cancer-related gene expression in both canine mammary tumor and human breast cancer
Cited by: 13
Author(s): A-Reum Nam, Kanghoon Lee, Hyeon-Ji Hwang, Johannes J. Schabort, Jaehoon An, Sungho Won, Je‐Yoel Cho
Software Mentions: 5
Published: over 4 years ago

10.1155/2020/6784138

Identification of FOS as a Candidate Risk Gene for Liver Cancer by Integrated Bioinformatic Analysis
Cited by: 10
Author(s): Jinwu Hu, Guangyu Ding, Pei-Yao Fu, Wei‐Guo Tang, Qiqing Sun, Xiao‐Dong Zhu, Ying‐Hao Shen, Ji Zhou, Jia Fan, Hui–Chuan Sun, Cheng Huang
Software Mentions: 4
Published: over 4 years ago

10.3389/fcell.2021.679544

CRISPR-Cas9 Editing of Human Histone Deubiquitinase Gene USP16 in Human Monocytic Leukemia Cell Line THP-1
Cited by: 2
Author(s): Iveta Gažová, Lucas Lefèvre, Stephen J. Bush, Rocío Rojo, David Hume, Andreas Lengeling, Kim M. Summers
Software Mentions: 3
Published: over 3 years ago

10.1093/bioinformatics/btaa707

The optimal discovery procedure for significance analysis of general gene expression studies
Cited by: 1
Author(s): Andrew J. Bass, J. Douglas Storey
Software Mentions: 3
Published: about 4 years ago

10.3389/fnins.2014.00409

Functional genomic analysis and neuroanatomical localization of miR-2954, a song-responsive sex-linked microRNA in the zebra finch
Cited by: 13
Author(s): Ya-Chi Lin, Christopher N. Balakrishnan, David F. Clayton
Software Mentions: 3
Published: almost 10 years ago

10.4317/jced.55915

Finite element analysis of stress concentration between surface coated implants and non surface coated implants - An in vitro study
Cited by: 1
Author(s): Tammineedi S.V. Satyanarayana, Rathika Rai, E. Subramanyam, T. Illango, Vishwabharathi Mutyala, Rajesh Akula
Software Mentions: 3
Published: almost 6 years ago

10.1002/mbo3.583

Characterization of Swedish<i>Campylobacter coli</i>clade 2 and clade 3 water isolates
Cited by: 5
Author(s): Anna Nilsson, Astrid Skarp, Cecilia Johansson, René Kaden, Lars Engstrand, Hilpi Rautelin
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-016-2363-5

Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients
Cited by: 41
Author(s): Roy G. Danzmann, Andrea L. Kocmarek, Joseph D. Norman, Caird E. Rexroad, Yniv Palti
Software Mentions: 3
Published: almost 9 years ago

10.3390/s20195492

A Recurrent Deep Network for Estimating the Pose of Real Indoor Images from Synthetic Image Sequences
Cited by: 16
Author(s): Debaditya Acharya, Sesa Singha Roy, Kourosh Khoshelham, Stephan Winter
Software Mentions: 2
Published: about 4 years ago

10.1186/1476-7120-6-44

Normalization of flow-mediated dilation to shear stress area under the curve eliminates the impact of variable hyperemic stimulus
Cited by: 133
Author(s): Jaume Padilla, Blair D. Johnson, Sean C. Newcomer, Daniel P. Wilhite, Timothy D. Mickleborough, Alyce D. Fly, Kieren J. Mather, Janet P. Wallace
Software Mentions: 2
Published: about 16 years ago

10.7717/peerj.7522

Characterization of ceRNA network to reveal potential prognostic biomarkers in triple-negative breast cancer
Cited by: 16
Author(s): Xiang Song, Chao Zhang, Zhaoyun Liu, Qi Liu, Kewen He, Zhiyong Yu
Software Mentions: 2
Published: about 5 years ago

10.1155/2018/4518265

Image-Guided Rendering with an Evolutionary Algorithm Based on Cloud Model
Cited by: 2
Author(s): Tao Wu
Software Mentions: 2
Published: over 6 years ago

10.18632/aging.203338

Identification of 4-methylation driven genes based prognostic signature in thyroid cancer: an integrative analysis based on the methylmix algorithm
Cited by: 0
Author(s): Zhiwei Chen, Xiaoli Liu, Fangfang Liu, Guolie Zhang, Haijian Tu, Wei Lin, Haifeng Lin
Software Mentions: 2
Published: about 3 years ago