Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
cran: gstat
Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and SimulationPapers that mentioned: 138
pypi: ISA
ISA (Independent Statistics Aggregator) collects node statistics for a cluster of nodes.Papers that mentioned: 137
pypi: voom
A python message bus that you can put 4 million volts through.Papers that mentioned: 136
pypi: coot
Papers that mentioned: 136bioconductor: ALDEx2
Analysis Of Differential Abundance Taking Sample and Scale Variation Into AccountPapers that mentioned: 136
cran: coin
Conditional Inference Procedures in a Permutation Test FrameworkPapers that mentioned: 135
cran: LEAP
Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime OrderingPapers that mentioned: 135
bioconductor: Gviz
Plotting data and annotation information along genomic coordinatesPapers that mentioned: 134
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignmentsPapers that mentioned: 134
bioconductor: goseq
Gene Ontology analyser for RNA-seq and other length biased dataPapers that mentioned: 132
cran: ggfortify
Data Visualization Tools for Statistical Analysis ResultsPapers that mentioned: 132
bioconductor: DMRcate
Methylation array and sequencing spatial analysis methodsPapers that mentioned: 132
pypi: PyNN
A Python package for simulator-independent specification of neuronal network modelsPapers that mentioned: 131
cran: haplo.stats
Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is AmbiguousPapers that mentioned: 131
pypi: QDA
A tool for quantitatively measuring the discursive similarity between bodies of text.Papers that mentioned: 128
pypi: graphics
A console based graphics engine for simple Unicode games and animations.Papers that mentioned: 126
cran: fdrtool
Estimation of (Local) False Discovery Rates and Higher CriticismPapers that mentioned: 124
bioconductor: EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labelingPapers that mentioned: 123
pypi: mapper
Python Mapper: an open source tool for exploration, analysis and visualization of data.Papers that mentioned: 122
cran: fitdistrplus
Help to Fit of a Parametric Distribution to Non-Censored or Censored DataPapers that mentioned: 120
pypi: pyani
pyani provides a package and script for calculation of genome-scale average nucleotide identity.Papers that mentioned: 120
bioconductor: maSigPro
Significant Gene Expression Profile Differences in Time Course Gene Expression DataPapers that mentioned: 119
pypi: DendroPy
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.Papers that mentioned: 119
pypi: PyClone
Wraps rclone and provides an interface for an installation at the host or container level.Papers that mentioned: 119
cran: Morpho
Calculations and Visualisations Related to Geometric MorphometricsPapers that mentioned: 118
pypi: Cython
The Cython compiler for writing C extensions in the Python language.Papers that mentioned: 118
bioconductor: survcomp
Performance Assessment and Comparison for Survival AnalysisPapers that mentioned: 117
cran: beast
Bayesian Estimation of Change-Points in the Slope of Multivariate Time-SeriesPapers that mentioned: 115
bioconductor: MSstats
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics ExperimentsPapers that mentioned: 115
cran: BiodiversityR
Package for Community Ecology and Suitability AnalysisPapers that mentioned: 115
pypi: biopython
Freely available tools for computational molecular biology.Papers that mentioned: 114