Data

Tools

Indexes

Applications

Experiments

Papers

bioconductor: DOSE
Disease Ontology Semantic and Enrichment analysis
Papers that mentioned: 138
Very Likely Science (100)
cran: gstat
Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation
Papers that mentioned: 138
Very Likely Science (100)
cran: pls
Partial Least Squares and Principal Component Regression
Papers that mentioned: 137
Very Likely Science (85)
pypi: maps
Maps: flavors of Python dictionaries
Papers that mentioned: 137
Very Likely Science (65)
pypi: grid
Volumetric data module
Papers that mentioned: 137
Very Likely Science (65)
cran: maps
Draw Geographical Maps
Papers that mentioned: 137
Very Likely Science (75)
cran: AFM
Atomic Force Microscope Image Analysis
Papers that mentioned: 137
Very Likely Science (85)
pypi: ISA
ISA (Independent Statistics Aggregator) collects node statistics for a cluster of nodes.
Papers that mentioned: 137
Very Likely Science (75)
pypi: pls
`pls` is a prettier and powerful `ls` for the pros.
Papers that mentioned: 137
Very Likely Science (65)
bioconductor: ALDEx2
Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account
Papers that mentioned: 136
Very Likely Science (100)
pypi: coot
Papers that mentioned: 136
Unlikely Science (0)
cran: netmeta
Network Meta-Analysis using Frequentist Methods
Papers that mentioned: 136
Very Likely Science (100)
pypi: voom
A python message bus that you can put 4 million volts through.
Papers that mentioned: 136
Likely Science (40)
cran: CC
Control Charts
Papers that mentioned: 136
Very Likely Science (75)
pypi: coin
Copy Installer
Papers that mentioned: 135
Very Likely Science (65)
cran: PMCMR
Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Papers that mentioned: 135
Very Likely Science (75)
cran: coin
Conditional Inference Procedures in a Permutation Test Framework
Papers that mentioned: 135
Very Likely Science (75)
cran: LEAP
Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering
Papers that mentioned: 135
Very Likely Science (93)
bioconductor: Gviz
Plotting data and annotation information along genomic coordinates
Papers that mentioned: 134
Very Likely Science (100)
cran: iCluster
Integrative clustering of multiple genomic data types
Papers that mentioned: 134
Very Likely Science (75)
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
Very Likely Science (90)
cran: rstan
R Interface to Stan
Papers that mentioned: 133
Very Likely Science (83)
cran: vioplot
Violin Plot
Papers that mentioned: 133
Very Likely Science (100)
cran: sjPlot
Data Visualization for Statistics in Social Science
Papers that mentioned: 133
Very Likely Science (100)
cran: Rcmdr
R Commander
Papers that mentioned: 133
Very Likely Science (75)
cran: JM
Joint Modeling of Longitudinal and Survival Data
Papers that mentioned: 132
Very Likely Science (85)
cran: SNPassoc
SNPs-Based Whole Genome Association Studies
Papers that mentioned: 132
Very Likely Science (95)
cran: rptR
Repeatability Estimation for Gaussian and Non-Gaussian Data
Papers that mentioned: 132
Very Likely Science (75)
bioconductor: DMRcate
Methylation array and sequencing spatial analysis methods
Papers that mentioned: 132
Very Likely Science (100)
pypi: STEPS
STochastic Engine for Pathway Simulation
Papers that mentioned: 132
Very Likely Science (75)
bioconductor: goseq
Gene Ontology analyser for RNA-seq and other length biased data
Papers that mentioned: 132
Very Likely Science (100)
cran: ggfortify
Data Visualization Tools for Statistical Analysis Results
Papers that mentioned: 132
Very Likely Science (100)
pypi: PyNN
A Python package for simulator-independent specification of neuronal network models
Papers that mentioned: 131
Very Likely Science (90)
cran: ROSE
Random Over-Sampling Examples
Papers that mentioned: 131
Very Likely Science (75)
cran: rmda
Risk Model Decision Analysis
Papers that mentioned: 131
Very Likely Science (85)
bioconductor: NeighborNet
Neighbor_net analysis
Papers that mentioned: 131
Very Likely Science (100)
cran: haplo.stats
Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous
Papers that mentioned: 131
Very Likely Science (93)
pypi: gplot
A python library to plot charts from google sheet
Papers that mentioned: 130
Very Likely Science (65)
pypi: pysam
Package for reading, manipulating, and writing genomic data
Papers that mentioned: 130
Very Likely Science (100)
pypi: AMP
A Python 2.7 mathematical parsing library
Papers that mentioned: 130
Very Likely Science (95)
pypi: g
cli command to easily sync current directory
Papers that mentioned: 130
Very Likely Science (65)
pypi: FMEA
A flexible Mutable Symmetric Encryption algorithm
Papers that mentioned: 130
Very Likely Science (75)
pypi: editor
🖋 Open the default text editor 🖋
Papers that mentioned: 130
Very Likely Science (65)
cran: LCA
Localised Co-Dependency Analysis
Papers that mentioned: 129
Very Likely Science (93)
bioconductor: pcaMethods
A collection of PCA methods
Papers that mentioned: 129
Very Likely Science (100)
cran: MPS
Estimating Through the Maximum Product Spacing Approach
Papers that mentioned: 128
Likely Science (50)
pypi: QDA
A tool for quantitatively measuring the discursive similarity between bodies of text.
Papers that mentioned: 128
Very Likely Science (65)
bioconductor: MOMA
Multi Omic Master Regulator Analysis
Papers that mentioned: 128
Very Likely Science (100)
cran: DFA
Detrended Fluctuation Analysis
Papers that mentioned: 128
Very Likely Science (64)
pypi: DCA
Count autoencoder for scRNA-seq denoising
Papers that mentioned: 128
Very Likely Science (100)
cran: DCA
Dynamic Correlation Analysis for High Dimensional Data
Papers that mentioned: 128
Very Likely Science (93)
pypi: shiny
A web development framework for Python.
Papers that mentioned: 127
Very Likely Science (100)
cran: shiny
Web Application Framework for R
Papers that mentioned: 127
Very Likely Science (100)
pypi: graphics
A console based graphics engine for simple Unicode games and animations.
Papers that mentioned: 126
Likely Science (50)
cran: PROSPER
Simulation of Weed Population Dynamics
Papers that mentioned: 126
Very Likely Science (85)
cran: LA
Lioness Algorithm (LA)
Papers that mentioned: 126
Very Likely Science (85)
cran: coda
Output Analysis and Diagnostics for MCMC
Papers that mentioned: 126
Very Likely Science (85)
pypi: RMS
Papers that mentioned: 126
Very Likely Science (65)
pypi: coda
File metadata tagging and organization.
Papers that mentioned: 126
Very Likely Science (80)
cran: ROCS
Receiver Operating Characteristics Surface
Papers that mentioned: 125
Very Likely Science (83)
cran: sf
Simple Features for R
Papers that mentioned: 125
Very Likely Science (100)
cran: fdrtool
Estimation of (Local) False Discovery Rates and Higher Criticism
Papers that mentioned: 124
Very Likely Science (80)
pypi: NanoFilt
Filtering and trimming of Oxford Nanopore Sequencing data
Papers that mentioned: 124
Very Likely Science (100)
pypi: reshape
The missing reshape for Python
Papers that mentioned: 123
Very Likely Science (65)
cran: reshape
Flexibly Reshape Data
Papers that mentioned: 123
Very Likely Science (83)
bioconductor: ROC
utilities for ROC, with microarray focus
Papers that mentioned: 123
Very Likely Science (100)
cran: rstatix
Pipe-Friendly Framework for Basic Statistical Tests
Papers that mentioned: 123
Very Likely Science (85)
cran: piecewiseSEM
Piecewise Structural Equation Modeling
Papers that mentioned: 123
Very Likely Science (93)
cran: gemtc
Network Meta-Analysis Using Bayesian Methods
Papers that mentioned: 123
Very Likely Science (91)
bioconductor: EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
Papers that mentioned: 123
Very Likely Science (100)
pypi: mapper
Python Mapper: an open source tool for exploration, analysis and visualization of data.
Papers that mentioned: 122
Very Likely Science (90)
cran: Delta
Measure of Agreement Between Two Raters
Papers that mentioned: 122
Very Likely Science (75)
cran: R2jags
Using R to Run 'JAGS'
Papers that mentioned: 121
Very Likely Science (100)
cran: RAD
Fit RAD models to biological data
Papers that mentioned: 120
Very Likely Science (75)
pypi: server
UNKNOWN
Papers that mentioned: 120
Very Likely Science (65)
cran: fitdistrplus
Help to Fit of a Parametric Distribution to Non-Censored or Censored Data
Papers that mentioned: 120
Very Likely Science (91)
pypi: KNN
implimention of KNN in python
Papers that mentioned: 120
Very Likely Science (65)
pypi: pyani
pyani provides a package and script for calculation of genome-scale average nucleotide identity.
Papers that mentioned: 120
Very Likely Science (100)
pypi: PyClone
Wraps rclone and provides an interface for an installation at the host or container level.
Papers that mentioned: 119
Very Likely Science (65)
bioconductor: ShortRead
FASTQ input and manipulation
Papers that mentioned: 119
Very Likely Science (90)
pypi: DendroPy
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
Papers that mentioned: 119
Very Likely Science (90)
bioconductor: maSigPro
Significant Gene Expression Profile Differences in Time Course Gene Expression Data
Papers that mentioned: 119
Very Likely Science (100)
pypi: Cython
The Cython compiler for writing C extensions in the Python language.
Papers that mentioned: 118
Very Likely Science (100)
cran: Morpho
Calculations and Visualisations Related to Geometric Morphometrics
Papers that mentioned: 118
Very Likely Science (85)
bioconductor: GOSemSim
GO-terms Semantic Similarity Measures
Papers that mentioned: 118
Very Likely Science (90)
pypi: AutoQuant
Auto Quant
Papers that mentioned: 118
Very Likely Science (80)
cran: RAP
Reversal Association Pattern
Papers that mentioned: 118
Very Likely Science (75)
pypi: tools
Set of tools for web scraping projects
Papers that mentioned: 118
Very Likely Science (65)
cran: RAM
R for Amplicon-Sequencing-Based Microbial-Ecology
Papers that mentioned: 117
Very Likely Science (85)
bioconductor: survcomp
Performance Assessment and Comparison for Survival Analysis
Papers that mentioned: 117
Very Likely Science (100)
cran: GUIDE
GUI for DErivatives in R
Papers that mentioned: 117
Very Likely Science (83)
cran: pegas
Population and Evolutionary Genetics Analysis System
Papers that mentioned: 117
Very Likely Science (85)
cran: ICE
Iterated Conditional Expectation
Papers that mentioned: 116
Very Likely Science (75)
cran: BiodiversityR
Package for Community Ecology and Suitability Analysis
Papers that mentioned: 115
Very Likely Science (85)
pypi: Isomap
Deriving faces
Papers that mentioned: 115
Very Likely Science (65)
bioconductor: MSstats
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments
Papers that mentioned: 115
Very Likely Science (100)
pypi: beast
Bayesian Extinction and Stellar Tool
Papers that mentioned: 115
Very Likely Science (90)
cran: beast
Bayesian Estimation of Change-Points in the Slope of Multivariate Time-Series
Papers that mentioned: 115
Very Likely Science (100)
pypi: qbase
qq based programe for fun
Papers that mentioned: 115
Very Likely Science (65)
cran: Risk
Computes 26 Financial Risk Measures for Any Continuous Distribution
Papers that mentioned: 114
Very Likely Science (83)