Ecosyste.ms: Papers

10.3390/ijerph17114132

Data-Driven Modeling and the Influence of Objective Function Selection on Model Performance in Limited Data Regions
Cited by: 4
Author(s): Thelma Dede Baddoo, Zhijia Li, Yiqing Guan, Kenneth Rodolphe Chabi Boni, Isaac Kwesi Nooni
Software Mentions: 21
Published: over 4 years ago

10.1093/conphys/coaa131

Automated flow control of a multi-lane swimming chamber for small fishes indicates species-specific sensitivity to experimental protocols
Cited by: 3
Author(s): Björn Illing, Andrea Severati, Justin Hochen, Paul M. Boyd, Paulin Raison, Rachel Mather, Adam T. Downie, Jodie L. Rummer, Frederieke J. Kroon, Craig Humphrey
Software Mentions: 16
Published: almost 4 years ago

10.1371/journal.pntd.0002045

Drivers of Echinococcus multilocularis Transmission in China: Small Mammal Diversity, Landscape or Climate?
Cited by: 65
Author(s): Patrick Giraudoux, Francis Raoul, David Pleydell, Tiaoying Li, Xiuming Han, Jiamin Qiu, Yan Xie, Wang Hu, Akira Itō, Philip S. Craig
Software Mentions: 14
Published: over 11 years ago

10.1371/journal.pgen.1003209

Centromere-Like Regions in the Budding Yeast Genome
Cited by: 36
Author(s): Philippe Lefrançois, Raymond K. Auerbach, Christopher M. Yellman, G. Shirleen Roeder, M Snyder
Software Mentions: 10
Published: almost 12 years ago

10.1186/s12862-018-1251-9

Molecular variation across populations of a widespread North American firefly, Photinus pyralis, reveals that coding changes do not underlie flash color variation or associated visual sensitivity
Cited by: 12
Author(s): Sarah E. Lower, Kathrin F. Stanger‐Hall, David W. Hall
Software Mentions: 8
Published: about 6 years ago

10.1093/molbev/msz154

Ancient Hybridization and Adaptive Introgression of an Invadolysin Gene in Schistosome Parasites
Cited by: 51
Author(s): Roy N. Platt, Marina McDew-White, Winka Le Clec’h, Frédéric D. Chevalier, Fiona Allan, Aidan M. Emery, Amadou Garba, Amina Amadou Hamidou, M. Shaali, Joanne P. Webster, David Rollinson, Bonnie L. Webster, Timothy J. Anderson
Software Mentions: 7
Published: over 5 years ago

10.1111/mec.15010

Disentangling structural genomic and behavioural barriers in a sea of connectivity
Cited by: 60
Author(s): Julia Maria Isis Barth, David Villegas‐Ríos, Carla Freitas, Even Moland, Bastiaan Star, Carl André, Halvor Knutsen, Ian Bradbury, Jan Dierking, Christoph Petereit, David Righton, Julian D. Metcalfe, Kjetill S. Jakobsen, Esben Moland Olsen, Sissel Jentoft
Software Mentions: 7
Published: over 5 years ago

10.3390/pathogens9110914

Farm-Level Risk Factors of Increased Abortion and Mortality in Domestic Ruminants during the 2010 Rift Valley Fever Outbreak in Central South Africa
Cited by: 1
Author(s): Melinda K. Rostal, Sarah Cleaveland, Claudia Cordel, Lara van Staden, Louise Matthews, Assaf Anyamba, William B. Karesh, Janusz T. Pawęska, Daniel T. Haydon, Noam Ross
Software Mentions: 7
Published: about 4 years ago

10.1523/ENEURO.0195-16.2016

Physiological, Behavioral, and Scientific Impact of Different Fluid Control Protocols in the Rhesus Macaque (<i>Macaca mulatta</i>)
Cited by: 30
Author(s): Helen Gray, Henri Bertrand, Claire Mindus, P. A. Flecknell, Candy Rowe, Alexander Thiele
Software Mentions: 7
Published: over 8 years ago

10.1002/ece3.6994

Ecological and morphological determinants of evolutionary diversification in Darwin's finches and their relatives
Cited by: 14
Author(s): Ashley M. Reaney, Yanis Bouchenak‐Khelladi, Joe Tobias, Arhat Abzhanov
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0174606

News exposure predicts anti-Muslim prejudice
Cited by: 35
Author(s): John H. Shaver, Chris G. Sibley, Danny Osborne, Joseph Bulbulia
Software Mentions: 7
Published: over 7 years ago

10.1017/S0022149X15000590

Risk factors for<i>Echinococcus</i>coproantigen positivity in dogs from the Alay valley, Kyrgyzstan
Cited by: 11
Author(s): Alexander Mastin, Freya van Kesteren, Paul R. Torgerson, Iskender Ziadinov, Bermet Mytynova, M. T. Rogan, T Tursunov, Philip S. Craig
Software Mentions: 7
Published: about 9 years ago

10.1155/2019/8418760

Integrative Deep Learning for Identifying Differentially Expressed (DE) Biomarkers
Cited by: 8
Author(s): Jayeon Lim, SoYoun Bang, Jiyeon Kim, Cheolyong Park, JunSang Cho, Sunghwan Kim
Software Mentions: 7
Published: about 5 years ago

10.3389/fpsyg.2020.484737

Comparing Eight Parameter Estimation Methods for the Ratcliff Diffusion Model Using Free Software
Cited by: 5
Author(s): Rainer W. Alexandrowicz, Bartosz Gula
Software Mentions: 7
Published: about 4 years ago

10.1002/ece3.7654

Looking for the needle in a downsized haystack: Whole‐exome sequencing unravels genomic signals of climatic adaptation in Douglas‐fir (<i>Pseudotsuga menziesii</i>)
Cited by: 1
Author(s): Jan-Peter George, Silvio Schueler, Michael Grabner, Sandra Karanitsch-Ackerl, Konrad Mayer, Michael Stierschneider, Lambert Weißenbacher, Marcela van Loo
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pgen.1003733

Histone Variant HTZ1 Shows Extensive Epistasis with, but Does Not Increase Robustness to, New Mutations
Cited by: 45
Author(s): Joshua B. Richardson, Locke Uppendahl, Maria K. Traficante, Sasha F. Levy, Mark L. Siegal
Software Mentions: 7
Published: over 11 years ago

10.1186/s12909-019-1710-z

Item pre-knowledge true prevalence in clinical anatomy - application of gated item response theory model
Cited by: 1
Author(s): Mílton Severo, Fernanda Silva-Pereira, Maria Amélia Ferreira, Magda Monteiro, Isabel Pereira
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0178904

Modeling the live-pig trade network in Georgia: Implications for disease prevention and control
Cited by: 28
Author(s): Esther A. Kukielka, Beatriz Martínez‐López, Daniel Beltrán‐Alcrudo
Software Mentions: 7
Published: over 7 years ago

10.1186/s12936-017-1738-7

Change in Anopheles richness and composition in response to artificial flooding during the creation of the Jirau hydroelectric dam in Porto Velho, Brazil
Cited by: 9
Author(s): Moreno S. Rodrigures, Elis P. A. Batista, Alexandre de Almeida e Silva, Fábio Medeiros da Costa, Verissimo A. S. Neto, Luiz Herman Soares Gil
Software Mentions: 7
Published: almost 8 years ago

10.1001/jamanetworkopen.2019.8116

Assessment of Therapeutic Interventions and Lung Protective Ventilation in Patients With Moderate to Severe Acute Respiratory Distress Syndrome
Cited by: 58
Author(s): Hiroko Aoyama, Kanji Uchida, Kazuyoshi Aoyama, Petros Pechlivanoglou, Marina Englesakis, Yosuke Yamada, Eddy Fan
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0193759

Sharing-based social capital associated with harvest production and wealth in the Canadian Arctic
Cited by: 25
Author(s): Elspeth Ready
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0212668

Determinants of the little auk (Alle alle) breeding colony location and size in W and NW coast of Spitsbergen
Cited by: 28
Author(s): Liliana Katarzyna Keslinka, Katarzyna Wojczulanis‐Jakubas, Dariusz Jakubas, Grzegorz Neubauer
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.3356

A molecular phylogeny of the spiny lobster <i>Panulirus homarus</i> highlights a separately evolving lineage from the Southwest Indian Ocean
Cited by: 14
Author(s): Sohana P. Singh, Johan C. Groeneveld, Abdulaziz Al-Marzouqi, Sandi Willows‐Munro
Software Mentions: 6
Published: over 7 years ago

10.3390/s19204544

Semi-Automated Data Analysis for Ion-Selective Electrodes and Arrays Using the R Package ISEtools
Cited by: 3
Author(s): Peter W. Dillingham, Basim S. O. Alsaedi, Aleksandar Radu, Christina M. McGraw
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pcbi.1007323

Using text-mined trait data to test for cooperate-and-radiate co-evolution between ants and plants
Cited by: 16
Author(s): Katrina M. Kaur, Pierre‐Jean G. Malé, E. J. Spence, Crisanto Gómez, Megan E. Frederickson
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.ppat.1008179

Molecular dating and viral load growth rates suggested that the eclipse phase lasted about a week in HIV-1 infected adults in East Africa and Thailand
Cited by: 24
Author(s): Morgane Rolland, Sodsai Tovanabutra, Bethany L. Dearlove, Yifan Li, Christopher L. Owen, Éric Lewitus, Eric Sanders‐Buell, Meera Bose, Anne Marie O’Sullivan, Raabya Rossenkhan, Jan Phillipus Lourens Labuschagne, Paul T. Edlefsen, Daniel B. Reeves, Gustavo H. Kijak, Shana Miller, Kultida Poltavee, Jenica Lee, Lydia Bonar, Elizabeth A. Harbolick, Bahar Ahani, Phuc Pham, Hannah Kibuuka, Lucas Maganga, Sorachai Nitayaphan, Fred Sawe, Leigh Anne Eller, Robert A. Gramzinski, Jerome H. Kim, Nelson L. Michael, Merlin L. Robb
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12954-019-0289-3

Prevalence of injecting drug use in Estonia 2010–2015: a capture-recapture study
Cited by: 6
Author(s): Mait Raag, Sigrid Vorobjov, Anneli Uusküla
Software Mentions: 6
Published: over 5 years ago

10.1186/s12983-017-0222-0

Adaptive responses to salinity stress across multiple life stages in anuran amphibians
Cited by: 54
Author(s): Molly A. Albecker, Michael McCoy
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0078120

Effective Population Size, Genetic Variation, and Their Relevance for Conservation: The Bighorn Sheep in Tiburon Island and Comparisons with Managed Artiodactyls
Cited by: 20
Author(s): Jaime Gasca-Pineda, Ivonne Cassaigne, Ricardo Alonso, Luis E. Eguiarte
Software Mentions: 5
Published: about 11 years ago

10.1038/s41598-019-41948-x

The role of the environment in the evolution of nest shape in Australian passerines
Cited by: 13
Author(s): Iliana Medina
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0049263

Nocturnal Homing: Learning Walks in a Wandering Spider?
Cited by: 18
Author(s): Thomas Nørgaard, Yakir Luc Gagnon, Eric J. Warrant
Software Mentions: 5
Published: about 12 years ago

10.1038/s41598-018-23169-w

Impact of prenatal stress on offspring glucocorticoid levels: A phylogenetic meta-analysis across 14 vertebrate species
Cited by: 51
Author(s): Zaneta M. Thayer, Meredith Wilson, Andrew Wooyoung Kim, Adrian V. Jaeggi
Software Mentions: 5
Published: over 6 years ago

10.7554/eLife.56029

Recent shifts in the genomic ancestry of Mexican Americans may alter the genetic architecture of biomedical traits
Cited by: 14
Author(s): Melissa L. Spear, Alex Diaz-Papkovich, Elad Ziv, Joseph Yracheta, Simon Gravel, Dara G. Torgerson, Ryan D. Hernández
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12864-019-6323-8

Bias in estimates of variance components in populations undergoing genomic selection: a simulation study
Cited by: 9
Author(s): Hongding Gao, Per Madsen, G.P. Aamand, Jørn Rind Thomasen, Anders Christian Sørensen, Just Jensen
Software Mentions: 5
Published: almost 5 years ago

10.1186/1471-2164-15-1048

Genomic selection accuracies within and between environments and small breeding groups in white spruce
Cited by: 86
Author(s): Jean Beaulieu, Trevor Doerksen, John Mackay, André Rainville, Jean Bousquet
Software Mentions: 5
Published: almost 11 years ago

10.1038/srep09066

Hardy-Weinberg equilibrium revisited for inferences on genotypes featuring allele and copy-number variations
Cited by: 3
Author(s): Andreas Recke, Klaus-Günther Recke, Saleh M. Ibrahim, Steffen Möller, Reinhard Vonthein
Software Mentions: 5
Published: over 9 years ago

10.1098/rsos.192151

Augmenting disease maps: a Bayesian meta-analysis approach
Cited by: 2
Author(s): Farzana Jahan, Earl Duncan, Susanna Cramb, Peter D. Baade, Kerrie Mengersen
Software Mentions: 5
Published: over 4 years ago

10.1186/1746-6148-3-31

Heritability and complex segregation analysis of deafness in Jack Russell Terriers
Cited by: 16
Author(s): Thomas R. Famula, Edward J. Cargill, George M. Strain
Software Mentions: 5
Published: almost 18 years ago

10.1186/s12917-016-0723-7

Implementation of an extended ZINB model in the study of low levels of natural gastrointestinal nematode infections in adult sheep
Cited by: 7
Author(s): Marina Atlija, Joaquín M. Prada, Beatriz Gutiérrez-Gil, F.A. Rojo-Vázquez, M. J. Stear, J. J. Arranz, María Martínez‐Valladares
Software Mentions: 5
Published: over 8 years ago

10.1186/s12917-017-1145-x

Estimation of the sensitivity and specificity of two serum ELISAs and one fecal qPCR for diagnosis of paratuberculosis in sub-clinically infected young-adult French sheep using latent class Bayesian modeling
Cited by: 20
Author(s): Yoann Mathevon, Gilles Foucras, Rémy Falguières, Fabien Corbière
Software Mentions: 5
Published: over 7 years ago

10.1016/j.prevetmed.2015.06.020

Dogslife: A cohort study of Labrador Retrievers in the UK
Cited by: 19
Author(s): Carys Pugh, Barend M. deC. Bronsvoort, Ian Handel, Kim M. Summers, Dylan Clements
Software Mentions: 5
Published: almost 9 years ago

10.1111/1365-2656.12055

Male reproductive strategy explains spatiotemporal segregation in brown bears
Cited by: 110
Author(s): Sam M. J. G. Steyaert, Jonas Kindberg, Jon E. Swenson, Andreas Zedrosser
Software Mentions: 5
Published: over 11 years ago

10.1038/s41598-021-95960-1

Modelling menstrual cycle length in athletes using state-space models
Cited by: 9
Author(s): Thiago de Paula Oliveira, Georgie Bruinvels, Charles R. Pedlar, Brian Moore, John Newell
Software Mentions: 5
Published: over 3 years ago

10.3389/fpsyg.2020.586246

Perceived Impact of Covid-19 Across Different Mental Disorders: A Study on Disorder-Specific Symptoms, Psychosocial Stress and Behavior
Cited by: 71
Author(s): Hannah L. Quittkat, Rainer Düsing, Friederike-Johanna Holtmann, Ulrike Buhlmann, Jennifer Svaldi, Silja Vocks
Software Mentions: 5
Published: about 4 years ago

10.1002/ece3.6783

Unidirectional response to bidirectional selection on body size II. Quantitative genetics
Cited by: 9
Author(s): Arnaud Le Rouzic, Clémentine Renneville, Alexis Millot, Simon Agostini, David Carmignac, Éric Édeline
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pcbi.1008537

Factors influencing estimates of HIV-1 infection timing using BEAST
Cited by: 3
Author(s): Bethany L. Dearlove, Sodsai Tovanabutra, Christopher L. Owen, Éric Lewitus, Yifan Li, Eric Sanders‐Buell, Meera Bose, Anne Marie O’Sullivan, Gustavo H. Kijak, Shana Miller, Kultida Poltavee, Jenica Lee, Lydia Bonar, Elizabeth A. Harbolick, Bahar Ahani, Phuc Pham, Hannah Kibuuka, Lucas Maganga, Sorachai Nitayaphan, Fred Sawe, Jerome H. Kim, Leigh Anne Eller, Sandhya Vasan, Robert A. Gramzinski, Nelson L. Michael, Merlin L. Robb, Morgane Rolland
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0235660

Transmission network reconstruction for foot-and-mouth disease outbreaks incorporating farm-level covariates
Cited by: 12
Author(s): Simon M. Firestone, Yoko Hayama, Max S. Y. Lau, Takehisa Yamamoto, Tatsuya Nishi, Richard Bradhurst, Haydar Demirhan, Mark Stevenson, Toshiyuki Tsutsui
Software Mentions: 5
Published: over 4 years ago

10.3390/ani10122271

Heritability of Teat Condition in Italian Holstein Friesian and Its Relationship with Milk Production and Somatic Cell Score
Cited by: 3
Author(s): Francesco Tiezzi, A Maisano, S. Chessa, M. Luini, Stefano Biffani
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12862-016-0764-3

The biodiversity hotspot as evolutionary hot-bed: spectacular radiation of Erica in the Cape Floristic Region
Cited by: 45
Author(s): Michael D. Pirie, E. G. H. Oliver, A. Mugrabi de Kuppler, Berit Gehrke, Nicholas C Le Maitre, Martha Kandziora, Baoheng Du
Software Mentions: 4
Published: about 8 years ago

10.1186/s12864-015-2001-7

Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle
Cited by: 23
Author(s): Jeremy Howard, M. Haile‐Mariam, J.E. Pryce, Christian Maltecca
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pbio.3000562

Should a viral genome stay in the host cell or leave? A quantitative dynamics study of how hepatitis C virus deals with this dilemma
Cited by: 6
Author(s): Shoya Iwanami, Kosaku Kitagawa, Hirofumi Ohashi, Yasufumi Asai, Kaho Shionoya, Wakana Saso, Kazane Nishioka, Hisashi Inaba, Shinji Nakaoka, Takaji Wakita, Odo Diekmann, Shingo Iwami, Koichi Watashi
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1007840

An open source tool to infer epidemiological and immunological dynamics from serological data: serosolver
Cited by: 12
Author(s): James A. Hay, Amanda Minter, Kylie E. C. Ainslie, Justin Lessler, Bingyi Yang, Derek A. T. Cummings, Adam J. Kucharski, Steven Riley
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1005495

Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks
Cited by: 89
Author(s): Don Klinkenberg, J.A. Backer, Xavier Didelot, Caroline Colijn, Jacco Wallinga
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pntd.0005568

Detecting the impact of temperature on transmission of Zika, dengue, and chikungunya using mechanistic models
Cited by: 387
Author(s): Erin A. Mordecai, Jeremy M. Cohen, Michelle V. Evans, Prithvi Gudapati, Leah R. Johnson, Catherine A. Lippi, Kerri L. Miazgowicz, Courtney C. Murdock, Jason R. Rohr, Sadie J. Ryan, Van M. Savage, Marta S. Shocket, Anna Stewart Ibarra, Matthew B. Thomas, Daniel P. Weikel
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0050604

Nonparametric Method for Genomics-Based Prediction of Performance of Quantitative Traits Involving Epistasis in Plant Breeding
Cited by: 16
Author(s): Xiaofang Sun, Ping Ma, Rita H. Mumm
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pone.0058241

Allometric Convergence in Savanna Trees and Implications for the Use of Plant Scaling Models in Variable Ecosystems
Cited by: 20
Author(s): Andrew T. Tredennick, Lisa Patrick Bentley, Niall P. Hanan
Software Mentions: 4
Published: over 11 years ago

10.3389/fgene.2014.00248

The CNVrd2 package: measurement of copy number at complex loci using high-throughput sequencing data
Cited by: 22
Author(s): Hoang Nguyen, Tony R. Merriman, Michael A. Black
Software Mentions: 4
Published: over 10 years ago

10.3389/fpls.2016.01145

Evolution of Epiphytism and Fruit Traits Act Unevenly on the Diversification of the Species-Rich Genus Peperomia (Piperaceae)
Cited by: 9
Author(s): Lena Frenzke, Paul Goetghebeur, Christoph Neinhuis, Marie‐Stéphanie Samain, Stefan Wanke
Software Mentions: 4
Published: over 8 years ago

10.1093/gbe/evw171

Estimating the Effective Sample Size of Tree Topologies from Bayesian Phylogenetic Analyses
Cited by: 49
Author(s): Robert Lanfear, Xia Hua, Dan L. Warren
Software Mentions: 4
Published: over 8 years ago

10.1002/jrsm.1167

Automated generation of node‐splitting models for assessment of inconsistency in network meta‐analysis
Cited by: 312
Author(s): Gert van Valkenhoef, Sofia Dias, A E Ades, Nicky J Welton
Software Mentions: 4
Published: about 9 years ago

10.1038/srep13889

Quantifying the heritability of testicular germ cell tumour using both population-based and genomic approaches
Cited by: 53
Author(s): Kevin Litchfield, Hauke Thomsen, Jonathan S. Mitchell, Jan Sundquist, Richard S. Houlston, Kari Hemminki, Clare Turnbull
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-020-58350-7

Diagnostic Uncertainty and the Epidemiology of Feline Foamy Virus in Pumas (Puma concolor)
Cited by: 8
Author(s): Nicholas G. Dannemiller, Sarah Kechejian, Simona Kraberger, Kenneth A. Logan, Mathew W. Alldredge, Kevin R. Crooks, Sue VandeWoude, Scott Carver
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-59223-9

Long-term observations from Antarctica demonstrate that mismatched scales of fisheries management and predator-prey interaction lead to erroneous conclusions about precaution
Cited by: 79
Author(s): George M. Watters, Jefferson T. Hinke, Christian S. Reiss
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12942-020-00234-0

Multivariate Bayesian meta-analysis: joint modelling of multiple cancer types using summary statistics
Cited by: 2
Author(s): Farzana Jahan, Earl Duncan, Susanna Cramb, Peter D. Baade, Kerrie Mengersen
Software Mentions: 4
Published: about 4 years ago

10.3390/nu8120747

Effects of Hazelnut Consumption on Blood Lipids and Body Weight: A Systematic Review and Bayesian Meta-Analysis
Cited by: 41
Author(s): Simone Perna, Attilio Giacosa, Gianluca Bonitta, Chiara Bologna, Antonio Isu, Davide Guido, Mariangela Rondanelli
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0032026

Foraging Fidelity as a Recipe for a Long Life: Foraging Strategy and Longevity in Male Southern Elephant Seals
Cited by: 37
Author(s): Matthieu Authier, I. Bentaleb, Aurore Ponchon, Céline Martin, Christophe Guinet
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0233569

Population density and habitat use of two sympatric small cats in a central Indian reserve
Cited by: 7
Author(s): Nilanjan Chatterjee, Parag Nigam, Bilal Habib
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1009174

Spatial and temporal invasion dynamics of the 2014–2017 Zika and chikungunya epidemics in Colombia
Cited by: 5
Author(s): Kelly Charniga, Zulma M. Cucunubá, Marcela Mercado, Franklyn Prieto, Martha Ospina, Pierre Nouvellet, Christl A. Donnelly
Software Mentions: 3
Published: over 3 years ago

10.1007/s10393-017-1253-x

Sylvatic Plague Vaccine Partially Protects Prairie Dogs (Cynomys spp.) in Field Trials
Cited by: 45
Author(s): Tonie E. Rocke, Daniel W. Tripp, Robin E. Russell, Rachel C. Abbott, Katherine L. D. Richgels, Marc R. Matchett, Dean E. Biggins, Randall L. Griebel, Greg Schroeder, Shaun M. Grassel, David R. Pipkin, Jennifer Cordova, Adam Kavalunas, Brian D. Maxfield, Jesse T. Boulerice, Michael W. Miller
Software Mentions: 3
Published: over 7 years ago

10.1002/ece3.6690

Female zebra finches prefer the songs of males who quickly solve a novel foraging task to the songs of males unable to solve the task
Cited by: 2
Author(s): Clara Howell, Rindy C. Anderson, Elizabeth P. Derryberry
Software Mentions: 3
Published: over 4 years ago

10.1002/ece3.1676

multimark: an R package for analysis of capture–recapture data consisting of multiple “noninvasive” marks
Cited by: 22
Author(s): Brett T. McClintock
Software Mentions: 3
Published: about 9 years ago

10.1002/ece3.6486

Phenotypic responses to temperature in the ciliate <i>Tetrahymena thermophila</i>
Cited by: 5
Author(s): Vanessa Weber de Melo, Robert Lowe, Paul J. Hurd, Owen L. Petchey
Software Mentions: 3
Published: over 4 years ago

10.7717/peerj.389

The role of a water bug,<i>Sigara striata</i>, in freshwater food webs
Cited by: 9
Author(s): Jan Klečka
Software Mentions: 3
Published: over 10 years ago

10.1111/eva.13211

Introduced populations of ragweed show as much evolutionary potential as native populations
Cited by: 10
Author(s): Brechann V. McGoey, John R. Stinchcombe
Software Mentions: 3
Published: over 3 years ago

10.3389/fpls.2020.01168

Genetic Progress of Seed Yield and Nitrogen Use Efficiency of Brazilian carioca Common Bean Cultivars Using Bayesian Approaches
Cited by: 13
Author(s): Douglas Mariani Zeffa, Vânia Moda-Cirino, Isabella Arruda Medeiros, Gustavo Henrique Freiria, José dos Santos Neto, Suzana Tiemi Ivamoto, Jéssica Delfini, Carlos Alberto Scapim, Leandro Simões Azeredo Gonçalves
Software Mentions: 3
Published: over 4 years ago

10.7717/peerj.1727

A hierarchical model of daily stream temperature using air-water temperature synchronization, autocorrelation, and time lags
Cited by: 57
Author(s): Benjamin H. Letcher, Daniel J. Hocking, Kyle O’Neil, Andrew R. Whiteley, Keith H. Nislow, Matthew J. O’Donnell
Software Mentions: 3
Published: over 8 years ago

10.1186/1756-3305-6-359

Bayesian geostatistical modelling of soil-transmitted helminth survey data in the People’s Republic of China
Cited by: 49
Author(s): Ying-Si Lai, Xiao‐Nong Zhou, Jürg Utzinger, Penelope Vounatsou
Software Mentions: 3
Published: almost 11 years ago

10.1186/s13071-018-2945-y

The epidemiology of porcine Taenia solium cysticercosis in communities of the Central Highlands in Vietnam
Cited by: 19
Author(s): Dinh Ng-Nguyen, John Noh, Kathleen Breen, Mark Stevenson, Sukwan Handali, Rebecca J. Traub
Software Mentions: 3
Published: over 6 years ago

10.1186/s12711-015-0100-1

Accounting for trait architecture in genomic predictions of US Holstein cattle using a weighted realized relationship matrix
Cited by: 48
Author(s): Francesco Tiezzi, Christian Maltecca
Software Mentions: 3
Published: over 9 years ago

10.1186/1472-6785-13-10

Pollen flow and effects of population structure on selfing rates and female and male reproductive success in fragmented Magnolia stellata populations
Cited by: 35
Author(s): Suzuki Setsuko, Teruyoshi Nagamitsu, Nobuhiro Tomaru
Software Mentions: 3
Published: almost 12 years ago

10.1186/s13071-019-3613-6

Mini-FLOTAC as an alternative, non-invasive diagnostic tool for Schistosoma mansoni and other trematode infections in wildlife reservoirs
Cited by: 12
Author(s): Stefano Catalano, Amelia Symeou, Kirsty J. Marsh, Anna Borlase, Elsa Léger, Cheikh Binetou Fall, Mariama Sène, Nicolas D. Diouf, Davide Ianniello, Giuseppe Cringoli, Laura Rinaldi, Khalilou Bâ, Joanne P. Webster
Software Mentions: 3
Published: about 5 years ago

10.1016/S2542-5196(20)30129-7

Prevalence and distribution of schistosomiasis in human, livestock, and snail populations in northern Senegal: a One Health epidemiological study of a multi-host system
Cited by: 61
Author(s): Elsa Léger, Anna Borlase, Cheikh Binetou Fall, Nicolas D. Diouf, S Diop, Lucy Yasenev, Stefano Catalano, Cheikh Thiam, Alassane Ndiaye, Aidan M. Emery, Alice Morrell, Muriel Rabone, Momar Ndao, Babacar Faye, David Rollinson, James W. Rudge, Mariama Sène, Joanne P. Webster
Software Mentions: 3
Published: over 4 years ago

10.1098/rspb.2016.2407

Intra- and intersexual differences in parasite resistance and female fitness tolerance in a polymorphic insect
Cited by: 30
Author(s): Beatriz Willink, Erik I. Svensson
Software Mentions: 3
Published: almost 8 years ago

10.1073/pnas.2006778117

Virulence mismatches in index hosts shape the outcomes of cross-species transmission
Cited by: 39
Author(s): Nardus Mollentze, Daniel G. Streicker, Pablo R. Murcia, Katie Hampson, Roman Biek
Software Mentions: 3
Published: about 4 years ago

10.1186/s12889-021-10609-y

Occupancy modeling and resampling overcomes low test sensitivity to produce accurate SARS-CoV-2 prevalence estimates
Cited by: 2
Author(s): Jamie S. Sanderlin, Jessie D. Golding, Taylor M. Wilcox, Daniel H. Mason, Kevin S. McKelvey, Dean E. Pearson, Michael K. Schwartz
Software Mentions: 3
Published: over 3 years ago

10.1186/s12885-021-08430-2

Nitric oxide in occurrence, progress and therapy of lung Cancer: a systemic review and meta-analysis
Cited by: 6
Author(s): Hongbin Zhou, Jiuke Li, Zhewen Chen, Ying Chen, Sa Ye
Software Mentions: 3
Published: over 3 years ago

10.1128/JVI.02239-20

Quantifying and Modeling the Acquisition and Retention of Lumpy Skin Disease Virus by Hematophagus Insects Reveals Clinically but Not Subclinically Affected Cattle Are Promoters of Viral Transmission and Key Targets for Control of Disease Outbreaks
Cited by: 22
Author(s): Beatriz Sanz‐Bernardo, Ismar R. Haga, Najith Wijesiriwardana, Subhash Basu, Will Larner, Adriana V. Díaz, Zoë Langlands, Eric Denison, Joanne Stoner, Mia White, C. J. Sanders, Philippa C. Hawes, Anthony J. Wilson, John Atkinson, Carrie Batten, Luke Alphey, Karin E. Darpel, Simon Gubbins, Philippa M. Beard
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-91627-z

African forest elephant movements depend on time scale and individual behavior
Cited by: 9
Author(s): Christopher Beirne, Thomas M. Houslay, Peter Morkel, Connie J. Clark, Mike Fay, Joseph Okouyi, Lee White, John R. Poulsen
Software Mentions: 3
Published: over 3 years ago

10.1186/s12862-018-1173-6

Admixture, evolution, and variation in reproductive isolation in the Boechera puberula clade
Cited by: 8
Author(s): M. Schilling, Zachariah Gompert, Fay‐Wei Li, Michael D. Windham, Paul G. Wolf
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0155675

Spatial and Temporal Variation in the Effects of Climatic Variables on Dugong Calf Production
Cited by: 14
Author(s): Mariana M. P. B. Fuentes, Steven Delean, Jillian Grayson, Sally L. Lavender, Murray Logan, Helene Marsh
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0189349

Multifactorial genetic divergence processes drive the onset of speciation in an Amazonian fish
Cited by: 11
Author(s): Luiz Jardim de Queiroz, Gislene Torrente‐Vilara, Claudio S. Quilodrán, Carolina Rodrigues da Costa Doria, Juan I. Montoya‐Burgos
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0033630

Change Point Estimation in Monitoring Survival Time
Cited by: 8
Author(s): Hassan Assareh, Kerrie Mengersen
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0130626

Correlates of Recent Declines of Rodents in Northern and Southern Australia: Habitat Structure Is Critical
Cited by: 29
Author(s): Michael J. Lawes, Diana O. Fisher, Christopher N. Johnson, Simon P. Blomberg, Anke S. K. Frank, Susanne A. Fritz, Hamish McCallum, Jeremy VanDerWal, Brett N. Abbott, Sarah Legge, Mike Letnic, Colette R. Thomas, Nikki Thurgate, A. Fisher, Iain J. Gordon, Alex S. Kutt
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0179847

Evaluating diagnostic tests for bovine tuberculosis in the southern part of Germany: A latent class analysis
Cited by: 22
Author(s): Valerie-Beau Pucken, Gabriela Knubben‐Schweizer, Dörte Döpfer, Andreas Groll, Angela Hafner‐Marx, Stefan Hörmansdorfer, Carola Sauter‐Louis, Reinhard K. Straubinger, Pia Zimmermann, Sonja Hartnack
Software Mentions: 3
Published: over 7 years ago

10.1186/s12711-015-0123-7

Causal relationships between milk quality and coagulation properties in Italian Holstein-Friesian dairy cattle
Cited by: 12
Author(s): Francesco Tiezzi, Bruno D. Valente, Martino Cassandro, Christian Maltecca
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0056843

Patterns and Drivers of Tree Mortality in Iberian Forests: Climatic Effects Are Modified by Competition
Cited by: 169
Author(s): Paloma Ruiz‐Benito, Emily R. Lines, Lorena Gómez‐Aparicio, Miguel Á. Zavala, David A. Coomes
Software Mentions: 2
Published: over 11 years ago

10.1186/s13071-017-2562-1

Latent class models for Echinococcus multilocularis diagnosis in foxes in Switzerland in the absence of a gold standard
Cited by: 11
Author(s): Belen Otero-Abad, María Teresa Armúa-Fernández, Peter Deplazes, Paul R. Torgerson, Sonja Hartnack
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0113809

Genetic and Morphological Divergence in Three Strains of Brook Trout Salvelinus fontinalis Commonly Stocked in Lake Superior
Cited by: 6
Author(s): Garrett J. McKinney, Anna Varian, Julie Scardina, Krista M. Nichols
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0114919

A Genome-Wide Association Study for Clinical Mastitis in First Parity US Holstein Cows Using Single-Step Approach and Genomic Matrix Re-Weighting Procedure
Cited by: 77
Author(s): Francesco Tiezzi, Kristen L. Parker-Gaddis, J.B. Cole, J. Clay, Christian Maltecca
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0098534

Estimating Diagnostic Test Accuracies for Brachyspira hyodysenteriae Accounting for the Complexities of Population Structure in Food Animals
Cited by: 8
Author(s): Sonja Hartnack, Christina Nathues, Heiko Nathues, Elisabeth große Beilage, Fraser Lewis
Software Mentions: 2
Published: over 10 years ago