Ecosyste.ms: Papers

10.3897/BDJ.8.e56876

Environmental DNA revealed the fish community of Hokkaido Island, Japan, after invasion by rainbow trout
Cited by: 5
Author(s): Akio Imamura, Kana Hayami, Masato Sakata, Toshifumi Minamoto
Software Mentions: 11
Published: about 4 years ago

10.1002/ece3.7907

Inventory of the benthic eukaryotic diversity in the oldest European lake
Cited by: 2
Author(s): Benjamin Wilden, Walter Traunspurger, Stefan Geisen
Software Mentions: 10
Published: over 3 years ago

10.1186/s13059-014-0413-3

A simple metric of promoter architecture robustly predicts expression breadth of human genes suggesting that most transcription factors are positive regulators
Cited by: 19
Author(s): Laurence D. Hurst, Oxana Sachenkova, Carsten O. Daub, Alistair R.R. Forrest, Łukasz Huminiecki
Software Mentions: 10
Published: over 10 years ago

10.1186/s12864-018-5166-z

RIVET: comprehensive graphic user interface for analysis and exploration of genome-wide translatomics data
Cited by: 17
Author(s): Amanda Ernlund, Robert J. Schneider, Kelly V. Ruggles
Software Mentions: 9
Published: about 6 years ago

10.3389/fgene.2021.683037

De novo Transcriptome Sequencing Coupled With Co-expression Analysis Reveal the Transcriptional Regulation of Key Genes Involved in the Formation of Active Ingredients in Peucedanum praeruptorum Dunn Under Bolting Period
Cited by: 7
Author(s): Cheng Song, Xiaoli Li, Bin Jia, Li Liu, Jinmei Ou, Bangxing Han
Software Mentions: 8
Published: over 3 years ago

10.3390/microorganisms9020378

Differences in the Concentration of the Fecal Neurotransmitters GABA and Glutamate Are Associated with Microbial Composition among Healthy Human Subjects
Cited by: 18
Author(s): Hend Altaib, Kohei Nakamura, Mayuko Abe, Yassien Badr, Emiko Yanase, Izumi Nomura, Tomohiko Suzuki
Software Mentions: 8
Published: almost 4 years ago

10.1186/s13148-020-00837-1

Differential CpG DNA methylation in peripheral naïve CD4+ T-cells in early rheumatoid arthritis patients
Cited by: 21
Author(s): Rujiraporn Pitaksalee, AN Burska, Shoaib Ajaib, Joshua Hugh Rogers, Rekha Parmar, K. Mydlova, Xuanxiao Xie, Alastair Droop, Jagtar Singh Nijjar, P Chambers, Paul Emery, Richard Hodgett, Iain B. McInnes, Frédérique Ponchel
Software Mentions: 7
Published: over 4 years ago

10.1186/s12864-019-6162-7

Transcriptome analysis of the differential effect of the NADPH oxidase gene RbohB in Phaseolus vulgaris roots following Rhizobium tropici and Rhizophagus irregularis inoculation
Cited by: 11
Author(s): Citlali Fonseca-García, Alejandra E. Zayas, Jesús Montiel, Noreide Nava, Federico Sánchez, Carmen Quinto
Software Mentions: 7
Published: about 5 years ago

10.1093/database/baz151

LeukmiR: a database for miRNAs and their targets in acute lymphoblastic leukemia
Cited by: 13
Author(s): Abdul Rawoof, Guruprasadh Swaminathan, Shrish Tiwari, Rekha A. Nair, Lekha Dinesh Kumar
Software Mentions: 7
Published: almost 5 years ago

10.7717/peerj.7141

Comparison of soil bacterial community and functional characteristics following afforestation in the semi-arid areas
Cited by: 27
Author(s): Jiaojiao Deng, Yan Zhang, You Yin, Xu Zhu, Wenxu Zhu, Yongbin Zhou
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2020.00992

Identification of the Six-RNA-Binding Protein Signature for Prognosis Prediction in Bladder Cancer
Cited by: 13
Author(s): Yucai Wu, Yi Liu, Anbang He, Bao Guan, Shiming He, Cuijian Zhang, Zhengjun Kang, Yanqing Gong, Xuesong Li, Liqun Zhou
Software Mentions: 6
Published: over 4 years ago

10.3389/fmicb.2018.01401

Stoichiometric Shifts in Soil C:N:P Promote Bacterial Taxa Dominance, Maintain Biodiversity, and Deconstruct Community Assemblages
Cited by: 50
Author(s): Zachary T. Aanderud, Sabrina Saurey, Becky A. Ball, Diana H. Wall, John E. Barrett, Mario E. Muscarella, Natasha A. Griffin, Ross A. Virginia, Albert Barberán, Byron J. Adams
Software Mentions: 6
Published: over 6 years ago

10.3389/fimmu.2021.640190

Pre-existing Immunity to Japanese Encephalitis Virus Alters CD4 T Cell Responses to Zika Virus Inactivated Vaccine
Cited by: 7
Author(s): Noemia S. Lima, Damee Moon, Samuel Darko, Rafael A. De La Barrera, Leyi Lin, Michael Koren, Richard G. Jarman, Kenneth H. Eckels, Stephen J. Thomas, Nelson L. Michael, Kayvon Modjarrad, Daniel C. Douek, Lydie Trautmann
Software Mentions: 6
Published: almost 4 years ago

10.1186/s12917-020-02332-4

Dietary supplementation of micro-encapsulated sodium butyrate in healthy horses: effect on gut histology and immunohistochemistry parameters
Cited by: 7
Author(s): Wendy Wambacq, D.A. van Doorn, Pauline Rovers-Paap, Richard Ducatelle, Lieven Vlaminck, Marta Ribeiro Alves Lourenço, Myriam Hesta
Software Mentions: 6
Published: over 4 years ago

10.1136/bmj.m3249

Clinical characteristics of children and young people admitted to hospital with covid-19 in United Kingdom: prospective multicentre observational cohort study
Cited by: 445
Author(s): Olivia Swann, Karl Holden, Lance Turtle, Louisa Pollock, Cameron J Fairfield, Thomas M Drake, Sohan Seth, Conor Egan, Hayley Hardwick, Sophie Halpin, Michelle Girvan, Chloe Donohue, Mark G Pritchard, Latifa Patel, Shamez Ladhani, Louise Sigfrid, Ian Sinha, Piero Olliaro, Jonathan S Nguyen‐Van‐Tam, Peter Horby, Laura Merson, Gail Carson, Jake Dunning, Peter Openshaw, J Kenneth Baillie, Ewen M Harrison, Annemarie B Docherty, Malcolm G Semple
Software Mentions: 6
Published: over 4 years ago

10.3389/fmicb.2019.01637

Characterization of Distinct CyanoHABs-Related Modules in Microbial Recurrent Association Network
Cited by: 30
Author(s): Seong-Jun Chun, Yingshun Cui, Chang‐Soo Lee, A Ra Cho, Kiwoon Baek, Jae‐Suk Choi, So-Ra Ko, Hyung-Gwan Lee, Seungwoo Hwang, Hee‐Mock Oh, Chi‐Yong Ahn
Software Mentions: 6
Published: over 5 years ago

10.3390/proteomes6030031

Regional Diversity in the Postsynaptic Proteome of the Mouse Brain
Cited by: 37
Author(s): Marcia Roy, Oksana Sorokina, Colin McLean, Silvia Tapia-González, Javier DeFelipe, J. Douglas Armstrong, Seth G. N. Grant
Software Mentions: 5
Published: over 6 years ago

10.1186/s13148-016-0234-1

Amnion as a surrogate tissue reporter of the effects of maternal preeclampsia on the fetus
Cited by: 8
Author(s): Masako Suzuki, Ryo Maekawa, Nicole E. Patterson, David M. Reynolds, Brent Calder, Sandra E. Reznik, Hye Heo, Francine Einstein, John M. Greally
Software Mentions: 5
Published: over 8 years ago

10.18632/aging.102185

Prognostic value of long non-coding RNA signatures in bladder cancer
Cited by: 30
Author(s): Anbang He, Shiming He, Peng Ding, Yonghao Zhan, Yifan Li, Zhicong Chen, Yanqing Gong, Xuesong Li, Liqun Zhou
Software Mentions: 5
Published: over 5 years ago

10.1038/srep46203

Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection
Cited by: 25
Author(s): Arun Kommadath, Hua Bao, Igseo Choi, James M. Reecy, James E. Koltes, Eric R. Fritz-Waters, Christopher J. Eisley, Jason R. Grant, R. Rowland, Christopher K. Tuggle, Jack C. M. Dekkers, Joan K. Lunney, Le Luo Guan, Paul Stothard, Graham Plastow
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.ppat.1009290

Shiga toxin remodels the intestinal epithelial transcriptional response to Enterohemorrhagic Escherichia coli
Cited by: 8
Author(s): Alyson R. Warr, Carole J. Kuehl, Matthew K. Waldor
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.ppat.1009101

RV144 HIV-1 vaccination impacts post-infection antibody responses
Cited by: 12
Author(s): Thembi Mdluli, Ningbo Jian, Bonnie M. Slike, Dominic Paquin‐Proulx, G. Donofrio, Aljawharah Alrubayyi, Syna Kuriakose Gift, Rebecca Grande, Mary Bryson, Anna Lee, Vincent Dussupt, Letzibeth Mendez-Riveria, Eric Sanders‐Buell, Agnès‐Laurence Chenine, Ursula Tran, Yifan Li, Eric N. Brown, Paul T. Edlefsen, Robert J. O’Connell, Peter B. Gilbert, Sorachai Nitayaphan, Punnee Pitisuttihum, Supachai Rerks-Ngarm, Merlin L. Robb, Robert A. Gramzinski, Galit Alter, Sodsai Tovanabutra, Ivelin S. Georgiev, Margaret E. Ackerman, Victoria R. Polonis, Sandhya Vasan, Nelson L. Michael, Jerome H. Kim, Michael A. Eller, Shelly J. Krebs, Morgane Rolland
Software Mentions: 5
Published: about 4 years ago

10.3390/ijms221910297

Circular RNAs Repertoire and Expression Profile during Brassica rapa Pollen Development
Cited by: 10
Author(s): Saeid Babaei, Mohan B. Singh, Prem L. Bhalla
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2016.00853

Bacterial Dormancy Is More Prevalent in Freshwater than Hypersaline Lakes
Cited by: 39
Author(s): Zachary T. Aanderud, Joshua C. Vert, Jay T. Lennon, Tylan W. Magnusson, Donald P. Breakwell, Alan R. Harker
Software Mentions: 5
Published: over 8 years ago

10.7717/peerj.4694

Viromes of one year old infants reveal the impact of birth mode on microbiome diversity
Cited by: 89
Author(s): A. McCann, Feargal J. Ryan, Stephen R. Stockdale, Marion Dalmasso, Tony Blake, C. Anthony Ryan, Catherine Stanton, Susan Mills, R. Paul Ross, Colin Hill
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2015.00024

Resuscitation of the rare biosphere contributes to pulses of ecosystem activity
Cited by: 150
Author(s): Zachary T. Aanderud, Stuart Jones, Noah Fierer, Jay T. Lennon
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pntd.0009587

Transcriptomic analysis and molecular docking reveal genes involved in the response of Aedes aegypti larvae to an essential oil extracted from Eucalyptus
Cited by: 9
Author(s): Ivana Sierra, José Manuel Latorre-Estivalis, Lucila Traverso, Paula Valeria Gonzalez, Ariel A Aptekmann, Alejandro D. Nadra, Héctor Mario Masuh, Sheila Ons
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-017-13462-5

Spatial detection of fetal marker genes expressed at low level in adult human heart tissue
Cited by: 54
Author(s): Michaela Asp, Fredrik Salmén, Patrik L. Ståhl, Sanja Vicković, Ulrika Felldin, Marie Löfling, José Fernández Navarro, Jonas Maaskola, Maria Eriksson, Bengt Persson, Matthias Corbascio, Hans Persson, Cecilia Linde, Joakim Lundeberg
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-018-31640-x

Cell type-resolved human lung lipidome reveals cellular cooperation in lung function
Cited by: 28
Author(s): Jennifer Kyle, Gérémy Clair, Gautam Bandyopadhyay, Ravi S. Misra, Erika Zink, Kent Bloodsworth, Anil Shukla, Yina Du, Jacquelyn Lillis, Jason Myers, John M. Ashton, Timothy Bushnell, Matthew Cochran, Gail H. Deutsch, Erin Baker, James P. Carson, Thomas J. Mariani, Yan Xu, Jeffrey A. Whitsett, Gloria S. Pryhuber, Charles Ansong
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1009164

The PAX-FOXO1s trigger fast trans-differentiation of chick embryonic neural cells into alveolar rhabdomyosarcoma with tissue invasive properties limited by S phase entry inhibition
Cited by: 7
Author(s): Gloria González Curto, Audrey Der Vartanian, Youcef El-Mokhtar Frarma, Line Manceau, Lorenzo Baldi, Selene Prisco, Nabila Elarouci, Frédéric Causeret, Daniil Korenkov, Muriel Rigolet, Frédéric Auradé, Aurélien de Reyniès, Vincent Contremoulins, Frédéric Relaix, Orestis Faklaris, James Briscoe, Pascale Gilardi-Hebenstreit, Vanessa Ribes
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-020-63764-4

SEER and Gene Expression Data Analysis Deciphers Racial Disparity Patterns in Prostate Cancer Mortality and the Public Health Implication
Cited by: 7
Author(s): Wensheng Zhang, Yan Dong, Oliver Sartor, Erik K. Flemington, Kun Zhang
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0236633

A comparison of PTI defense profiles induced in Solanum tuberosum by PAMP and non-PAMP elicitors shows distinct, elicitor-specific responses
Cited by: 7
Author(s): Rafaela Lopes Martin, Pauline Le Boulch, Pauline Clin, Adrián Schwarzenberg, Jean-Claude Yvin, Didier Andrivon, Éric Nguema-Ona, Florence Val
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-021-96992-3

Dynamic prokaryotic communities in the dark western Mediterranean Sea
Cited by: 3
Author(s): Catalina Mena, Rosa Balbín, Patricia Reglero, Melissa Martín, Rocío Santiago, Eva Sintes
Software Mentions: 4
Published: over 3 years ago

10.1186/s12864-017-4183-7

Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana
Cited by: 49
Author(s): Xiaoning Zhang, Yi-Fei Shi, Jordan J. Powers, Niraj Gowda, Chong Zhang, Heba M. M. Ibrahim, Hannah B. Ball, Samuel Chen, Hua Lu, Stephen M. Mount
Software Mentions: 4
Published: about 7 years ago

10.1186/s12862-014-0260-6

At the brink of eusociality: transcriptomic correlates of worker behaviour in a small carpenter bee
Cited by: 59
Author(s): Sandra M. Rehan, Ali J. Berens, Amy L. Toth
Software Mentions: 4
Published: about 10 years ago

10.3390/microorganisms8111631

Rapid Changes in Microbial Community Structures along a Meandering River
Cited by: 11
Author(s): Perrine Cruaud, Adrien Vigneron, Caetano C. Dorea, Manuel J. Rodriguez, Steve J. Charette
Software Mentions: 4
Published: about 4 years ago

10.1128/mBio.02623-19

Developmentally Regulated Oscillations in the Expression of UV Repair Genes in a Soilborne Plant Pathogen Dictate UV Repair Efficiency and Survival
Cited by: 6
Author(s): Shira Milo-Cochavi, Sheera Adar, Shay Covo
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2017.01372

Transcriptome Analysis of Circulating Immune Cell Subsets Highlight the Role of Monocytes in Zaire Ebola Virus Makona Pathogenesis
Cited by: 40
Author(s): Andrea Menicucci, Krista Versteeg, Courtney Woolsey, Chad E. Mire, Joan B. Geisbert, Robert W. Cross, Krystle N. Agans, Allen Jankeel, Thomas W. Geisbert, Ilhem Messaoudi
Software Mentions: 4
Published: about 7 years ago

10.1038/s41438-020-00360-7

The IAA- and ABA-responsive transcription factor CgMYB58 upregulates lignin biosynthesis and triggers juice sac granulation in pummelo
Cited by: 37
Author(s): Meiyan Shi, Xiao Liu, Haipeng Zhang, Zhen-Yu He, Hong-Chang Yang, Jiajing Chen, Jia Feng, Wenhui Yang, Youwu Jiang, Jia‐Long Yao, Cecilia Deng, Juan Xu
Software Mentions: 4
Published: over 4 years ago

10.3390/cancers11020147

A Simplified Genomic Profiling Approach Predicts Outcome in Metastatic Colorectal Cancer
Cited by: 8
Author(s): Carlo Capalbo, Francesca Belardinilli, Domenico Raimondo, Edoardo Milanetti, Umberto Malapelle, Pasquale Pisapia, Valentina Magri, Alessandra Anna Prete, Silvia Pecorari, Mariarosaria Colella, Anna Coppa, Caterina Bonfiglio, Arianna Nicolussi, Virginia Valentini, Alessandra Tessitore, Beatrice Cardinali, Marialaura Petroni, Paola Infante, Matteo Santoni, Marco Filetti, Valeria Colicchia, Paola Paci, Silvia Mezi, Flavia Longo, Enrico Cortesi, Paolo Marchetti, Giancarlo Troncone, Diana Bellavia, Gianluca Canettieri
Software Mentions: 3
Published: almost 6 years ago

10.1155/2021/9652420

MicroRNA-520a Suppresses Pathogenesis and Progression of Non-Small-Cell Lung Cancer through Targeting the RRM2/Wnt Axis
Cited by: 11
Author(s): Youhua Xie, Congyu Xue, Shuai Guo, Lei Yang
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12864-020-07087-8

Do the human gut metagenomic species possess the minimal set of core functionalities necessary for life?
Cited by: 2
Author(s): Matteo Soverini, Simone Rampelli, Silvia Turroni, Patrizia Brigidi, Elena Biagi, Marco Candela
Software Mentions: 3
Published: over 4 years ago

10.1186/s12864-020-6514-3

Transcriptomics supports local sensory regulation in the antenna of the kissing-bug Rhodnius prolixus
Cited by: 21
Author(s): José Manuel Latorre-Estivalis, Marcos Sterkel, Sheila Ons, Marcelo G. Lorenzo
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12870-021-03060-z

An NADPH oxidase regulates carbon metabolism and the cell cycle during root nodule symbiosis in common bean (Phaseolus vulgaris)
Cited by: 10
Author(s): Citlali Fonseca-García, Noreide Nava, Miguel Lara, Carmen Quinto
Software Mentions: 3
Published: over 3 years ago

10.1186/s40168-019-0666-x

Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces
Cited by: 139
Author(s): Aleksandra Checinska Sielaff, Camilla Urbaniak, Ganesh Babu Malli Mohan, В. П. Степанов, Quyen Tran, Jason M. Wood, Jeremiah J. Minich, Daniel McDonald, Teresa Mayer, Rob Knight, Fathi Karouia, George E. Fox, Kasthuri Venkateswaran
Software Mentions: 3
Published: over 5 years ago

10.3390/microorganisms9071423

Mycobiota in the Carposphere of Sour and Sweet Cherries and Antagonistic Features of Potential Biocontrol Yeasts
Cited by: 7
Author(s): Ramunė Stanevičienė, Juliana Lukša, Živilė Strazdaitė-Žielienė, Bazilė Ravoitytė, Regina Losinska-Sičiūnienė, Raimondas Mozūraitis, Elena Servienė
Software Mentions: 3
Published: over 3 years ago

10.7717/peerj.6251

Different revegetation types alter soil physical-chemical characteristics and fungal community in the Baishilazi Nature Reserve
Cited by: 26
Author(s): Jiaojiao Deng, You Yin, Jiyao Luo, Wenxu Zhu, Yongbin Zhou
Software Mentions: 3
Published: almost 6 years ago

10.1111/ppl.13086

Blue light induces major changes in the gene expression profile of the cyanobacterium<scp><i>Synechocystis</i></scp>sp. PCC 6803
Cited by: 14
Author(s): Veerle M. Luimstra, J. Merijn Schuurmans, Klaas J. Hellingwerf, H.C.P. Matthijs, Jef Huisman
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0173548

Characterization of the mechanism of drug-drug interactions from PubMed using MeSH terms
Cited by: 28
Author(s): Ling Yin, Bryan Figler, Hong Huang, Yi-Cheng Tu, Wang Ju, Feng Cheng
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0207936

Gene expression is implicated in the ability of pikas to occupy Himalayan elevational gradient
Cited by: 9
Author(s): Katherine A. Solari, Uma Ramakrishnan, Elizabeth A. Hadly
Software Mentions: 3
Published: about 6 years ago

10.1186/s13148-017-0335-5

DNA methylation profiling in peripheral lung tissues of smokers and patients with COPD
Cited by: 72
Author(s): Isaac K. Sundar, Qin Yin, Brian S. Baier, Li Yan, Witold Mazur, Dongmei Li, Martha Susiarjo, Irfan Rahman
Software Mentions: 3
Published: over 7 years ago

10.1016/j.cub.2021.03.056

Stable high-density and maternally inherited Wolbachia infections in Anopheles moucheti and Anopheles demeilloni mosquitoes
Cited by: 40
Author(s): Thomas Walker, Shannon Quek, Claire L. Jeffries, Janvier Bandibabone, Vishaal Dhokiya, Roland Bamou, Mojca Kristan, Louisa A. Messenger, Alexandra Gidley, Emily A. Hornett, Enyia R Anderson, Cintia Cansado-Utrilla, Shivanand Hegde, Bantuzeko Chimanuka, Jennifer Stevenson, Neil F. Lobo, Simon C. Wagstaff, Christophe Antonio-Nkondjio, Seth R. Irish, Eva Heinz, Grant L. Hughes
Software Mentions: 3
Published: over 3 years ago

10.1111/eva.12385

Sublethal salinity stress contributes to habitat limitation in an endangered estuarine fish
Cited by: 40
Author(s): Lisa M. Komoroske, Ken M. Jeffries, Richard E. Connon, Jason Dexter, Matthias Hasenbein, Christine E. Verhille, Nann A. Fangue
Software Mentions: 3
Published: over 8 years ago

10.3389/fcvm.2020.623012

Gene Expression Profiling Reveals the Shared and Distinct Transcriptional Signatures in Human Lung Epithelial Cells Infected With SARS-CoV-2, MERS-CoV, or SARS-CoV: Potential Implications in Cardiovascular Complications of COVID-19
Cited by: 27
Author(s): Pawan Kumar Jha, Aatira Vijay, Arda Halu, Shizuka Uchida, Masanori Aikawa
Software Mentions: 3
Published: almost 4 years ago

10.3389/fimmu.2018.03071

Protection Against Marburg Virus Using a Recombinant VSV-Vaccine Depends on T and B Cell Activation
Cited by: 34
Author(s): Andrea Marzi, Andrea Menicucci, Flora Engelmann, Julie Callison, Eva Horne, Friederike Feldmann, Allen Jankeel, Heinz Feldmann, Ilhem Messaoudi
Software Mentions: 3
Published: almost 6 years ago

10.1111/jcmm.16264

Construction of co‐expression modules related to survival by WGCNA and identification of potential prognostic biomarkers in glioblastoma
Cited by: 22
Author(s): Jing Zhou, Hao Guo, Likun Liu, Shulan Hao, Zhi Guo, Fupeng Zhang, Yu Tang Gao, Zhi Wang, Weiwei Zhang
Software Mentions: 3
Published: almost 4 years ago

10.1038/srep18563

Gut bacterial diversity of the tribes of India and comparison with the worldwide data
Cited by: 106
Author(s): Madhusmita Dehingia, Kanchal Thangjam devi, Narayan Chandra Talukdar, Rupjyoti Talukdar, Nageshwar Reddy, Sharmila S. Mande, Manab Deka, Mojibur R. Khan
Software Mentions: 3
Published: about 9 years ago

10.1038/srep26337

Mucosal adherent bacterial dysbiosis in patients with colorectal adenomas
Cited by: 142
Author(s): Yingying Lǚ, Jing Chen, Jun-Yuan Zheng, Guoyong Hu, Jingjing Wang, Chen Huang, Lihong Lou, Xingpeng Wang, Yue Zeng
Software Mentions: 3
Published: over 8 years ago

10.1038/srep34315

Unravelling molecular mechanisms from floral initiation to lipid biosynthesis in a promising biofuel tree species, Pongamia pinnata using transcriptome analysis
Cited by: 21
Author(s): Rachapudi Venkata Sreeharsha, Shalini Mudalkar, Kambam Tamna Singha, A. Ramachandra Reddy
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-017-08563-0

Patterns of transcriptional parallelism and variation in the developing olfactory system of Drosophila species
Cited by: 7
Author(s): Jia-Wern Pan, Qingyun Li, Scott Barish, Sumie Okuwa, Shuaiguo Zhao, Charles Soeder, Matthew Kanke, Corbin D. Jones, Pelin Volkan
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-09963-y

Infection with the Makona variant results in a delayed and distinct host immune response compared to previous Ebola virus variants
Cited by: 30
Author(s): Krista Versteeg, Andrea Menicucci, Courtney Woolsey, Chad E. Mire, Joan B. Geisbert, Robert W. Cross, Krystle N. Agans, Daniel R. Jeske, Ilhem Messaoudi, Thomas W. Geisbert
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-10129-z

CD271 determines migratory properties of melanoma cells
Cited by: 31
Author(s): Josefine Radke, Florian Roßner, Torben Redmer
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-18506-4

Detection of antimicrobial resistance genes associated with the International Space Station environmental surfaces
Cited by: 69
Author(s): Camilla Urbaniak, Aleksandra Checinska Sielaff, K. G. Frey, Jonathan Allen, Nitin Kumar Singh, Crystal Jaing, Kevin Wheeler, Kasthuri Venkateswaran
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-020-59976-3

Immune correlates of postexposure vaccine protection against Marburg virus
Cited by: 18
Author(s): Courtney Woolsey, Allen Jankeel, Demetrius Matassov, Joan B. Geisbert, Krystle N. Agans, Viktoriya Borisevich, Robert W. Cross, Daniel J. Deer, Karla A. Fenton, Theresa Latham, Cheryl Gerardi, Chad E. Mire, John H. Eldridge, Ilhem Messaoudi
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms21155326

Oviduct Fluid Extracellular Vesicles Change the Phospholipid Composition of Bovine Embryos Developed In Vitro
Cited by: 21
Author(s): Charles Banliat, Daniel Le Bourhis, Ophélie Bernardi, Daniel Tomas, Valérie Labas, Pascal Salvetti, Benoît Guyonnet, Pascal Mermillod, Marie Saint‐Dizier
Software Mentions: 3
Published: over 4 years ago

10.3389/fpls.2021.634237

Influence of Rootstock Genotype and Ploidy Level on Common Clementine (Citrus clementina Hort. ex Tan) Tolerance to Nutrient Deficiency
Cited by: 3
Author(s): Julie Oustric, Stéphane Herbette, Raphaël Morillón, Jean Giannettini, Liliane Berti, Jérémie Santini
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-88383-5

Tetraploid Citrumelo 4475 rootstocks improve diploid common clementine tolerance to long-term nutrient deficiency
Cited by: 4
Author(s): Julie Oustric, Stéphane Herbette, Yann Quilichini, Raphaël Morillón, Jean Giannettini, Liliane Berti, Jérémie Santini
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0045551

Scaling Proprioceptor Gene Transcription by Retrograde NT3 Signaling
Cited by: 15
Author(s): Jun Lee, Andreas Friese, Monika Mielich, Markus W. Sigrist, Silvia Arber
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2019.01849

Salt-Tolerant Halophyte Rhizosphere Bacteria Stimulate Growth of Alfalfa in Salty Soil
Cited by: 88
Author(s): Jennifer Kearl, Caitlyn McNary, J. Scott Lowman, Chuansheng Mei, Zachary T. Aanderud, Steven T. Smith, Jason B. West, Emily Colton, Michelle Hamson, Brent L. Nielsen
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pbio.3000796

Repurposing the orphan drug nitisinone to control the transmission of African trypanosomiasis
Cited by: 12
Author(s): Marcos Sterkel, Lee R. Haines, Aitor Casas-Sánchez, Vincent O. Adung’a, Raquel J. Vionette-Amaral, Shannon Quek, Clair Rose, Mariana Silva dos Santos, Natalia García Escude, Hanafy M. Ismail, Mark J. I. Paine, Seth M. Barribeau, Simon C. Wagstaff, James I. MacRae, Daniel Masiga, Laith Yakob, Pedro L. Oliveira, Álvaro Acosta-Serrano
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2014.00413

Potential drivers of microbial community structure and function in Arctic spring snow
Cited by: 52
Author(s): Lorrie Maccario, Timothy M. Vogel, Catherine Larose
Software Mentions: 2
Published: over 10 years ago

10.7717/peerj.3350

Effects of arginine vasopressin on the urine proteome in rats
Cited by: 3
Author(s): Manxia An, Yanying Ni, Xundou Li, Youhe Gao
Software Mentions: 2
Published: over 7 years ago

10.1186/s13024-016-0135-y

Role of cytochrome c in α-synuclein radical formation: implications of α-synuclein in neuronal death in Maneb- and paraquat-induced model of Parkinson’s disease
Cited by: 43
Author(s): Ashutosh Kumar, Douglas Ganini, Ronald P. Mason
Software Mentions: 2
Published: about 8 years ago

10.3389/fphys.2020.573505

Skeletal Muscle Immunometabolism in Women With Polycystic Ovary Syndrome: A Meta-Analysis
Cited by: 8
Author(s): Maria Manti, Elisabet Stener‐Victorin, Anna Benrick
Software Mentions: 2
Published: about 4 years ago

10.3389/fpls.2021.665530

Metabolome-Based Genome-Wide Association Study Provides Genetic Insights Into the Natural Variation of Foxtail Millet
Cited by: 14
Author(s): Wei Wei, Shuangdong Li, Yixiang Wang, Bin Wang, Guangyu Fan, Qisen Zeng, Fang Zhao, Chunhai Xu, Xiaolei Zhang, Tang Tang, Xiaolei Feng, Jian Shi, Gaolei Shi, Weiqin Zhang, Guoliang Song, Huan Li, Rui Wang, Yali Zhang, Xinru Li, Dequan Wang, Wenying Zhang, Jingjing Pei, Xiaoming Wang, Zhihai Zhao
Software Mentions: 2
Published: over 3 years ago

10.1534/g3.116.037101

Cytoplasmic–Nuclear Incompatibility Between Wild Isolates of<i>Caenorhabditis nouraguensis</i>
Cited by: 13
Author(s): Piero Lamelza, Michael Ailion
Software Mentions: 2
Published: almost 8 years ago

10.1534/g3.117.300524

Drought Sensitivity of Norway Spruce at the Species’ Warmest Fringe: Quantitative and Molecular Analysis Reveals High Genetic Variation Among and Within Provenances
Cited by: 45
Author(s): Carlos Trujillo-Moya, Jan-Peter George, Silvia Fluch, Thomas Geburek, Michael Grabner, Sandra Karanitsch-Ackerl, Heino Konrad, Konrad Mayer, Eva Maria Sehr, Elisabeth Wischnitzki, Silvio Schueler
Software Mentions: 2
Published: almost 7 years ago

10.3390/genes11070793

Genome-Wide Identification of the CrRLK1L Subfamily and Comparative Analysis of Its Role in the Legume-Rhizobia Symbiosis
Cited by: 16
Author(s): Jorge Solís-Miranda, Citlali Fonseca-García, Noreide Nava, Ronal Pacheco, Carmen Quinto
Software Mentions: 2
Published: over 4 years ago

10.1186/s12943-016-0495-5

Identification of the dopamine transporter SLC6A3 as a biomarker for patients with renal cell carcinoma
Cited by: 51
Author(s): Sarah Schrödter, Martin Braun, Isabella Syring, Niklas Klümper, Mario C. Deng, Doris Schmidt, Sven Perner, Stefan Müller, Jörg Ellinger
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-021-89745-9

Beta cell adaptation to pregnancy requires prolactin action on both beta and non-beta cells
Cited by: 9
Author(s): Vipul Shrivastava, Megan Lee, Daniel Lee, Marle Pretorius, Bethany Radford, Guneet Makkar, Carol Huang
Software Mentions: 2
Published: over 3 years ago

10.3390/microorganisms7090284

Diversity and Co-Occurrence Patterns of Soil Bacterial and Fungal Communities of Chinese Cordyceps Habitats at Shergyla Mountain, Tibet: Implications for the Occurrence
Cited by: 12
Author(s): Junli Shao, Bei Lai, Wei Jiang, Jiating Wang, Yongfeng Hong, Fubin Chen, Shao-Qing Tan, Lianxian Guo
Software Mentions: 2
Published: over 5 years ago

10.3390/life10050068

Identification of Differentially Expressed Gene Transcripts in Porcine Endometrium during Early Stages of Pregnancy
Cited by: 5
Author(s): Mariusz Pierzchała, Dorota Pierzchała, Magdalena Ogłuszka, Ewa Poławska, Tadeusz Blicharski, Agnieszka Roszczyk, Agata Nawrocka, Paweł Urbański, Kamila Stepanow, Aleksandra Ciepłoch, A. Korwin‐Kossakowska, M.F.W. te Pas, Brygida Ślaska, Magdalena Buszewska-Forajta, J. M. Jaśkowski, Mateusz Sachajko, Magdalena Herudzińska, Bartosz M. Jaśkowski, Wojciech Niżański, Leyland Fraser, Urszula Czarnik, Haja N. Kadarmideen, Chandra Shekhar Pareek
Software Mentions: 2
Published: over 4 years ago

10.1186/s40064-016-2235-0

Luminal B breast cancer subtype displays a dicotomic epigenetic pattern
Cited by: 11
Author(s): Naiara G. Bediaga, Elena Beristain, B. Calvo, María A. Viguri, Borja Gutierrez-Corres, Ricardo Rezola, Irune Ruiz-Díaz, I. Guerra, Marian M. de Pancorbo
Software Mentions: 2
Published: over 8 years ago

10.1038/srep31742

COX7AR is a Stress-inducible Mitochondrial COX Subunit that Promotes Breast Cancer Malignancy
Cited by: 28
Author(s): Kezhong Zhang, Guohui Wang, Xuebao Zhang, Philipp P. Hüttemann, Yining Qiu, Jenney Liu, Allison V. Mitchell, Icksoo Lee, Chao Zhang, Jin Sook Lee, Petr Pecina, Guojun Wu, Zunhua Yang, Maik Hüttemann, Lawrence I. Grossman
Software Mentions: 2
Published: over 8 years ago

10.1038/srep45202

Molecular epidemiology of acute hemorrhagic conjunctivitis caused by coxsackie A type 24 variant in China, 2004–2014
Cited by: 25
Author(s): Li Zhang, Na Zhao, Xiaodan Huang, Xiuming Jin, Xin Geng, Ta‐Chien Chan, Shelan Liu
Software Mentions: 2
Published: almost 8 years ago

10.1128/mSphere.00069-15

Infant Gut Microbiota Development Is Driven by Transition to Family Foods Independent of Maternal Obesity
Cited by: 152
Author(s): Martin Frederik Laursen, Lars Peter Holst Andersen, Kim F. Michaelsen, Christian Mølgaard, Ellen Trolle, Martin Iain Bahl, Tine Rask Licht
Software Mentions: 2
Published: almost 9 years ago

10.1155/2021/2590665

Whole-Genome Duplication and Purifying Selection Contributes to the Functional Redundancy of Auxin Response Factor (ARF) Genes in Foxtail Millet (Setaria italica L.)
Cited by: 6
Author(s): Chun‐Xiang You, Bin Liu, Yujun Zhao, Wei Yu, Weina Si
Software Mentions: 2
Published: over 3 years ago

10.3390/bios10050050

Fecal Volatile Organic Compound Profiles are Not Influenced by Gestational Age and Mode of Delivery: A Longitudinal Multicenter Cohort Study
Cited by: 7
Author(s): Nancy Deianova, Sofia el Manouni el Hassani, Hendrik J. Niemarkt, Veerle Cossey, Anton H. van Kaam, Floor Jenken, Mirjam M. van Weissenbruch, Esmee M Doedes, Kyra Baelde, Renée X. de Menezes, Marc A. Benninga, Wouter J. de Jonge, Nanne K de Boer, Tim G. de Meij
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-018-27209-3

Lung cellular senescence is independent of aging in a mouse model of COPD/emphysema
Cited by: 44
Author(s): Kahkashan Rashid, Isaac K. Sundar, Janice Gerloff, Dongmei Li, Irfan Rahman
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-50988-2

Retinoic acid receptor α as a novel contributor to adrenal cortex structure and function through interactions with Wnt and Vegfa signalling
Cited by: 10
Author(s): Rami M. El Zein, Audrey H. Soria, José Felipe Golib Dzib, Amanda J. Rickard, Fábio Luiz Fernandes-Rosa, Benoît Samson-Couterie, Isabelle Giscos-Douriez, A. Rocha, Marko Poglitsch, Celso E. Gómez-Sánchez, Laurence Amar, Norbert B. Ghyselinck, Arndt Benecke, Maria‐Christina Zennaro, Sheerazed Boulkroun
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-57499-5

Rice pyramided line IRBB67 (Xa4/Xa7) homeostasis under combined stress of high temperature and bacterial blight
Cited by: 26
Author(s): Gerbert Sylvestre Dossa, Ian Lorenzo Quibod, Genelou Atienza-Grande, Ricardo Oliva, E. Maiß, Casiana Vera Cruz, Kerstin Wydra
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12859-017-1509-z

The Drosophila Gene Expression Tool (DGET) for expression analyses
Cited by: 43
Author(s): Yanhui Hu, Aram Comjean, Norbert Perrimon, Stephanie E. Mohr
Software Mentions: 2
Published: almost 8 years ago

10.3390/biology9120428

ATP-Dependent Chromatin Remodeler CHD9 Controls the Proliferation of Embryonic Stem Cells in a Cell Culture Condition-Dependent Manner
Cited by: 4
Author(s): Hyunjin Yoo, Hyeonwoo La, Eun Joo Lee, Heejin Choi, Jeongheon Oh, Nguyen Xuan Thang, Kwonho Hong
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-71328-9

Genome characteristics of Kordia antarctica IMCC3317T and comparative genome analysis of the genus Kordia
Cited by: 7
Author(s): Yeonjung Lim, Ilnam Kang, Jang-Cheon Cho
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-79020-8

Comparative transcriptome analysis of Rheum australe, an endangered medicinal herb, growing in its natural habitat and those grown in controlled growth chambers
Cited by: 11
Author(s): Deep Mala, Supriya Awasthi, Nitesh Kumar Sharma, Mohit Kumar Swarnkar, Ravi Shankar, Sanjay Kumar
Software Mentions: 2
Published: almost 4 years ago

10.3389/fgene.2018.00012

Identification and Expression Analysis of Wheat TaGF14 Genes
Cited by: 12
Author(s): Jun Guo, Shuang Dai, Haosheng Li, Aifeng Liu, Cheng Liu, Dungong Cheng, Xinyou Cao, Xiusheng Chu, Shengnan Zhai, Jianjun Li, Zhendong Zhao, Song Jiang
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0104839

A Quest for miRNA Bio-Marker: A Track Back Approach from Gingivo Buccal Cancer to Two Different Types of Precancers
Cited by: 35
Author(s): Navonil De Sarkar, Roshni Roy, Jit Kumar Mitra, Sandip Ghose, Arnab Chakraborty, Ranjan Rashmi Paul, Indranil Mukhopadhyay, Bidyut Roy
Software Mentions: 2
Published: over 10 years ago

10.1080/0886022X.2021.1937219

Untargeted serum metabolomics and tryptophan metabolism profiling in type 2 diabetic patients with diabetic glomerulopathy
Cited by: 11
Author(s): Fanliang Zhang, Renhua Guo, Wen Cui, Li Wang, Jing Xiao, Jin Shang, Zhanzheng Zhao
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12284-018-0200-y

Manipulating the Phytic Acid Content of Rice Grain Toward Improving Micronutrient Bioavailability
Cited by: 84
Author(s): Ishara Perera, Saman Seneweera, Naoki Hirotsu
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0080146

Next-Generation Sequencing-Based Transcriptome Analysis of Helicoverpa armigera Larvae Immune-Primed with Photorhabdus luminescens TT01
Cited by: 26
Author(s): Zhen Zhao, Gongqing Wu, Jia Wang, Chunlin Li, Li-hong Qiu
Software Mentions: 1
Published: about 11 years ago