Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-014-0413-3

https://doi.org/10.1186/s13059-014-0413-3

A simple metric of promoter architecture robustly predicts expression breadth of human genes suggesting that most transcription factors are positive regulators

Cited by: 19
Author(s): Laurence D. Hurst, Oxana Sachenkova, Carsten O. Daub, Alistair R.R. Forrest, Łukasz Huminiecki
Published: over 10 years ago

Software Mentions 10

bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
bioconductor: IRanges
Foundation of integer range manipulation in Bioconductor
Papers that mentioned: 62
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browser
Papers that mentioned: 107
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: jaccard
Test Similarity Between Binary Data using Jaccard/Tanimoto Coefficients
Papers that mentioned: 5
pypi: env
Environment Variables for Humans
Papers that mentioned: 10
pypi: ggplot
ggplot for python
Papers that mentioned: 796
pypi: gplot
A python library to plot charts from google sheet
Papers that mentioned: 130
pypi: libsvm
Pre-built LibSVM packages for Python.
Papers that mentioned: 203