Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
cran: ENMTools
Analysis of Niche Evolution using Niche and Distribution ModelsPapers that mentioned: 181
cran: deSolve
Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')Papers that mentioned: 179
pypi: PhyloSuite
A desktop platform for streamlined molecular sequence data management and state of the art evolutionary phylogenetics studies.Papers that mentioned: 179
cran: missForest
Nonparametric Missing Value Imputation using Random ForestPapers that mentioned: 178
bioconductor: FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry dataPapers that mentioned: 177
pypi: QSAR
Python library for QSAR model from Juvena Machine Learning Team.Papers that mentioned: 176
pypi: pipeline
Easy shell-like pipelines, with input from a file-like objectPapers that mentioned: 175
cran: spatstat
Spatial Point Pattern Analysis, Model-Fitting, Simulation, TestsPapers that mentioned: 172
pypi: COS
Utilities for data taken with the Cosmic Origins Spectrograph on the Hubble Space TelescopePapers that mentioned: 171
bioconductor: metagenomeSeq
Statistical analysis for sparse high-throughput sequencingPapers that mentioned: 169
pypi: IM
IM is a tool to manage virtual infrastructures on Cloud deploymentsPapers that mentioned: 168
pypi: xia2
An expert system for automated reduction of X-Ray diffraction data from macromolecular crystalsPapers that mentioned: 165
pypi: java
Papers that mentioned: 165cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'Papers that mentioned: 164
pypi: plotly
An open-source, interactive data visualization library for PythonPapers that mentioned: 163
bioconductor: ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and VisualizationPapers that mentioned: 161
pypi: Navigator
A framework to create simple, interactive command line tools.Papers that mentioned: 161
pypi: CNVkit
Copy number variation toolkit for high-throughput sequencing.Papers that mentioned: 161
cran: CARS
Covariate Assisted Ranking and Screening for Large-Scale Two-Sample InferencePapers that mentioned: 158
cran: COMBAT
A Combined Association Test for Genes using Summary StatisticsPapers that mentioned: 157
cran: FD
Measuring Functional Diversity (FD) from Multiple Traits, and Other Tools for Functional EcologyPapers that mentioned: 157
pypi: SurveyGizmo
A Python Wrapper for SurveyGizmo's restful API service.Papers that mentioned: 156
pypi: velvet
Beautiful signal processing and communications algorithms in PythonPapers that mentioned: 156
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbationsPapers that mentioned: 155
pypi: Django
A high-level Python web framework that encourages rapid development and clean, pragmatic design.Papers that mentioned: 155
bioconductor: methylKit
DNA methylation analysis from high-throughput bisulfite sequencing resultsPapers that mentioned: 154
pypi: LoRaWAN
Implementation of the LoRaWAN intended to connect to the Things Network Stack (V2-V3)Papers that mentioned: 152
pypi: Swarm
Swarm is a strategy rouge-like space simulator game written with `pygame/python3`.Papers that mentioned: 151
cran: rcompanion
Functions to Support Extension Education Program EvaluationPapers that mentioned: 149
pypi: Assembly
Assembly is a pythonic object-oriented, mid stack, batteries included framework built on Flask, that adds structure to your Flask application, and group your routes by class.Assembly allows developers to build web applications in much the same way they would build any other object-oriented Python program.Assembly Makes Flask Great Again!Papers that mentioned: 147
bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome rangesPapers that mentioned: 145
bioconductor: pathview
a tool set for pathway based data integration and visualizationPapers that mentioned: 144
cran: activPAL
Advanced Processing and Chart Generation from activPAL Events FilesPapers that mentioned: 144
pypi: PhyloPhlAn
Precise phylogenetic analysis of microbial isolates and genomes from metagenomesPapers that mentioned: 144
cran: randomForestSRC
Fast Unified Random Forests for Survival, Regression, and Classification (RF-SRC)Papers that mentioned: 143
bioconductor: genefilter
genefilter: methods for filtering genes from high-throughput experimentsPapers that mentioned: 142
bioconductor: baySeq
Empirical Bayesian analysis of patterns of differential expression in count dataPapers that mentioned: 139
pypi: workbench
A scalable framework for security research and development teams.Papers that mentioned: 139
bioconductor: LEA
LEA: an R package for Landscape and Ecological Association StudiesPapers that mentioned: 139
cran: gstat
Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and SimulationPapers that mentioned: 138