cran: labdsv | Projects | Ecosyste.ms: Papers

10.1080/19490976.2021.1940792

Antibiotic-driven intestinal dysbiosis in pediatric short bowel syndrome is associated with persistently altered microbiome functions and gut-derived bloodstream infections
Cited by: 13
Author(s): Robert Thänert, Anna Thänert, Jocelyn Ou, Adam Bajinting, Carey Ann D. Burnham, Holly J. Engelstad, Maria E. Tecos, I. Malick Ndao, Carla Hall-Moore, Colleen Rouggly-Nickless, Mike A. Carl, Deborah C. Rubin, Nicholas O. Davidson, Phillip I. Tarr, Barbara B. Warner, Gautam Dantas, Brad W. Warner
Software Mentions: 22
Published: almost 4 years ago

10.1371/journal.pone.0206563

Nitrogen addition pulse has minimal effect in big sagebrush (Artemisia tridentata) communities on the Pinedale Anticline, Wyoming (USA)
Cited by: 1
Author(s): Christopher W. Beltz, Megan L. Mobley, Ingrid C. Burke
Software Mentions: 13
Published: over 5 years ago

10.1371/journal.pone.0238219

Ground-dwelling arthropods of pinyon-juniper woodlands: Arthropod community patterns are driven by climate and overall plant productivity, not host tree species
Cited by: 6
Author(s): Derek A. Uhey, Hannah Lee Riskas, Aaron D. Smith, Richard W. Hofstetter
Software Mentions: 11
Published: about 4 years ago

10.1371/journal.pone.0156825

Inundation and Fire Shape the Structure of Riparian Forests in the Pantanal, Brazil
Cited by: 32
Author(s): Wellinton de Sá Arruda, Jens Oldeland, Antônio Conceição Paranhos Filho, Arnildo Pott, Nicolay Leme da Cunha, Iria Hiromi Ishii, Geraldo Alves Damasceno
Software Mentions: 11
Published: over 8 years ago

10.1371/journal.pone.0144779

Identifying Centres of Plant Biodiversity in South Australia
Cited by: 33
Author(s): Greg R. Guerin, Ed Biffin, Zdravko Baruch, Andrew J. Lowe
Software Mentions: 10
Published: almost 9 years ago

10.3389/fmicb.2020.01987

Development and Analysis of a Stable, Reduced Complexity Model Soil Microbiome
Cited by: 15
Author(s): Ryan McClure, Dan Naylor, Yuliya Farris, Michelle Davison, Sarah Fansler, Kirsten Hofmockel, Janet K. Jansson
Software Mentions: 8
Published: about 4 years ago

10.3389/fmicb.2019.01834

Captivity and Infection by the Fungal Pathogen Batrachochytrium salamandrivorans Perturb the Amphibian Skin Microbiome
Cited by: 35
Author(s): Kieran A. Bates, Jennifer Shelton, Victoria L. Mercier, Kevin Hopkins, Xavier A. Harrison, Silviu O. Petrovan, Matthew C. Fisher
Software Mentions: 8
Published: about 5 years ago

10.3390/microorganisms9061273

Inoculation with Mycorrhizal Fungi and Irrigation Management Shape the Bacterial and Fungal Communities and Networks in Vineyard Soils
Cited by: 8
Author(s): Nazareth Torres, Runze Yu, S. Kaan Kurtural
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pone.0204764

Evidence of forest restoration success and the conservation value of community-owned forests in Southwest China using dung beetles as indicators
Cited by: 6
Author(s): Casey D. Sullivan, Eleanor M. Slade, Ming Bai, Kun Shi, Philip Riordan
Software Mentions: 7
Published: about 6 years ago

10.7717/peerj.7038

Decoupled recovery of ecological communities after reclamation
Cited by: 3
Author(s): Zachary A. Sylvain, David H. Branson, Tatyana A. Rand, Natalie M. West, Erin K. Espeland
Software Mentions: 7
Published: over 5 years ago

10.1038/s42003-020-01626-5

Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups
Cited by: 44
Author(s): Kaleb Z. Abram, Zulema Udaondo, Carissa Bleker, Visanu Wanchai, Trudy M. Wassenaar, Michael S. Robeson, David W. Ussery
Software Mentions: 7
Published: almost 4 years ago

10.1007/s00248-019-01426-3

Fusarium Head Blight Modifies Fungal Endophytic Communities During Infection of Wheat Spikes
Cited by: 45
Author(s): Edward C. Rojas, Rumakanta Sapkota, Birgit Jensen, Henning Jørgensen, Tina Henriksson, Lise Nistrup Jørgensen, Mogens Nicolaisen, David B. Collinge
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0246932

Distribution and diversity of mosquitoes and Oropouche-like virus infection rates in an Amazonian rural settlement
Cited by: 10
Author(s): Jordam William Pereira-Silva, Claudia María Ríos-Velásquez, Gervilane Ribeiro de Lima, Eric Fabrício Marialva, Heliana Christy Matos Belchior, Sérgio Luíz Bessa Luz, Felipe Gomes Naveca, Felipe Arley Costa Pessoa
Software Mentions: 7
Published: almost 4 years ago

10.7717/peerj.7044

Skin bacterial communities of neotropical treefrogs vary with local environmental conditions at the time of sampling
Cited by: 19
Author(s): Angie Estrada, Myra C. Hughey, Daniel Medina, Eria A. Rebollar, Jenifer B. Walke, Reid N. Harris, Lisa K. Belden
Software Mentions: 7
Published: over 5 years ago

10.1186/s40793-019-0348-0

Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom
Cited by: 13
Author(s): Srijak Bhatnagar, Elise S. Cowley, Sebastian Kopf, Sherlynette Pérez Castro, Sean M. Kearney, Scott C. Dawson, Kurt Hanselmann, S. Emil Ruff
Software Mentions: 7
Published: almost 5 years ago

10.3389/fimmu.2019.00243

Diet in the Driving Seat: Natural Diet-Immunity-Microbiome Interactions in Wild Fish
Cited by: 16
Author(s): Ida M. Friberg, John D. Taylor, Joe Jackson
Software Mentions: 7
Published: almost 6 years ago

10.1186/s12898-018-0187-7

A random survival forest illustrates the importance of natural enemies compared to host plant quality on leaf beetle survival rates
Cited by: 5
Author(s): Thomas A. Verschut, Peter A. Hambäck
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0197286

The importance of artificial wetlands for birds: A case study from Cyprus
Cited by: 30
Author(s): Efthymia Giosa, Christos Mammides, Savvas Zotos
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0064212

Differential Response of the Cynomolgus Macaque Gut Microbiota to Shigella Infection
Cited by: 52
Author(s): Anna M. Seekatz, Aruna Panda, David A. Rasko, Franklin R. Toapanta, Emiley A. Eloe‐Fadrosh, Abdul Qayyum Khan, Zhenqiu Liu, Steven T. Shipley, Louis J. DeTolla, Marcelo B. Sztein, Claire M. Fraser
Software Mentions: 6
Published: over 11 years ago

10.1371/journal.pone.0192023

Spatiotemporal patterns of the macrofaunal community structure in the East China Sea, off the coast of Zhejiang, China, and the impact of the Kuroshio Branch Current
Cited by: 5
Author(s): Yong Xu, Fei Yu, Xinzheng Li, Lin Ma, Dong Dong, Qi Kou, Jixing Sui, Zhibin Gan, Lin Gong, Mei Yang, Yue-Yun Wang, Yue Sun, Jinbao Wang, Hongfa Wang
Software Mentions: 6
Published: almost 7 years ago

10.3390/insects8010030

Bee Community of Commercial Potato Fields in Michigan and Bombus impatiens Visitation to Neonicotinoid-Treated Potato Plants
Cited by: 16
Author(s): Amanda L. Buchanan, Jason Gibbs, Lidia Komondy, Zsofia Szendrei
Software Mentions: 6
Published: over 7 years ago

10.3389/fmicb.2018.02920

Symbiosis Specificity of the Preceding Host Plant Can Dominate but Not Obliterate the Association Between Wheat and Its Arbuscular Mycorrhizal Fungal Partners
Cited by: 23
Author(s): Catarina Campos, Mário de Carvalho, Clarisse Brı́gido, M. J. Goss, Tânia Nobre
Software Mentions: 6
Published: almost 6 years ago

10.3389/fmicb.2021.633649

Microbial Communities Under Distinct Thermal and Geochemical Regimes in Axial and Off-Axis Sediments of Guaymas Basin
Cited by: 24
Author(s): Andreas Teske, Gunter Wegener, Jeffrey P. Chanton, Dylan White, Barbara J. MacGregor, D. Hoer, Dirk de Beer, Guang‐Chao Zhuang, Matthew Saxton, Samantha B. Joye, D. Lizarralde, S. Adam Soule, S. Emil Ruff
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pntd.0003240

Noma Affected Children from Niger Have Distinct Oral Microbial Communities Based on High-Throughput Sequencing of 16S rRNA Gene Fragments
Cited by: 13
Author(s): Katrine Whiteson, Vladimir Lazarević, Manuela Tangomo-Bento, Myriam Girard, Heather Maughan, Didier Pittet, Patrice François, Jacques Schrenzel
Software Mentions: 6
Published: almost 10 years ago

10.1371/journal.pone.0233823

Lignin induced iron reduction by novel sp., Tolumonas lignolytic BRL6-1
Cited by: 8
Author(s): Gina Chaput, Andrew F. Billings, Lani DeDiego, Roberto Orellana, Joshua N. Adkins, Carrie Nicora, Young Mo Kim, Rosalie K. Chu, Blake A. Simmons, Kristen M. DeAngelis
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pone.0006462

Community Analysis of Chronic Wound Bacteria Using 16S rRNA Gene-Based Pyrosequencing: Impact of Diabetes and Antibiotics on Chronic Wound Microbiota
Cited by: 193
Author(s): Lance B. Price, Cindy M. Liu, Johan H. Melendez, Yelena M. Frankel, David M. Engelthaler, Maliha Aziz, Jolene R. Bowers, Rogan Rattray, Jacques Ravel, Chris Kingsley, Paul Keim, Gerald S. Lazarus, Jonathan M. Zenilman
Software Mentions: 6
Published: over 15 years ago

10.1371/journal.pone.0238396

Comparison between flaming, mowing and tillage weed control in the vineyard: Effects on plant community, diversity and abundance
Cited by: 22
Author(s): Matia Mainardis, Francesco Boscutti, Maria del Mar Rubio Cebolla, Gianfranco Pergher
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pone.0235726

Diversity of mosquitoes (Diptera: Culicidae) collected in different types of larvitraps in an Amazon rural settlement
Cited by: 8
Author(s): João Aprígio Guerra de Almeida, Heliana Christy Matos Belchior, Claudia María Ríos-Velásquez, Felipe Arley Costa Pessoa
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pone.0209403

Spatiotemporal variability in a copepod community associated with fluctuations in salinity and trophic state in an artificial brackish reservoir at Saemangeum, South Korea
Cited by: 10
Author(s): Yusuke Oda, Sho Nakano, Jongmo Suh, Hye‐Ji Oh, Mei-Yan Jin, Yong-Jae Kim, Masaki Sakamoto, Kwang‐Hyeon Chang
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0217198

The transition from bee-to-fly dominated communities with increasing elevation and greater forest canopy cover
Cited by: 30
Author(s): Lindsie M. McCabe, Ella Colella, Paige R. Chesshire, Dave Smith, Neil S. Cobb
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0129323

Microclimatic Divergence in a Mediterranean Canyon Affects Richness, Composition, and Body Size in Saproxylic Beetle Assemblages
Cited by: 4
Author(s): Jörn Buse, Samuel Fassbender, Martin H. Entling, Tomáš Pavlı́ček
Software Mentions: 5
Published: over 9 years ago

10.3389/fmicb.2016.00374

Methane Seep in Shallow-Water Permeable Sediment Harbors High Diversity of Anaerobic Methanotrophic Communities, Elba, Italy
Cited by: 34
Author(s): S. Emil Ruff, Hanna Kuhfuß, Gunter Wegener, Christian Lott, Alban Ramette, Johanna Wiedling, Katrin Knittel, Miriam Weber
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2019.01961

Sponges and Their Microbiomes Show Similar Community Metrics Across Impacted and Well-Preserved Reefs
Cited by: 19
Author(s): Marta Turon, Joan Cáliz, Xavier Triadó–Margarit, Emilio O. Casamayor, María Jesús Uriz
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-96990-5

Wood ants as biological control of the forest pest beetles Ips spp.
Cited by: 8
Author(s): Gema Trigos‐Peral, Orsolya Juhász, Péter János Kiss, Gábor Módra, Anna Tenyér, István Maák
Software Mentions: 5
Published: about 3 years ago

10.1186/s40168-019-0775-6

Root ethylene mediates rhizosphere microbial community reconstruction when chemically detecting cyanide produced by neighbouring plants
Cited by: 89
Author(s): Yan Chen, Michael Bonkowski, Yi Shen, Bryan S. Griffiths, Yuji Jiang, Xiaoyue Wang, Bo Sun
Software Mentions: 5
Published: almost 5 years ago

10.1128/mBio.00798-21

Manure Microbial Communities and Resistance Profiles Reconfigure after Transition to Manure Pits and Differ from Those in Fertilized Field Soil
Cited by: 10
Author(s): Kimberley V. Sukhum, Rhiannon C. Vargas, Manish Boolchandani, Alaric W. D’Souza, Sanket Patel, Akhil Kesaraju, Gretchen Walljasper, Harshad Hegde, Zhan Ye, Robert K. Valenzuela, Paul Gunderson, Casper Bendixsen, Gautam Dantas, Sanjay Kumar Shukla
Software Mentions: 5
Published: over 3 years ago

10.1128/mSphere.00534-20

The Fungal Microbiome Is an Important Component of Vineyard Ecosystems and Correlates with Regional Distinctiveness of Wine
Cited by: 47
Author(s): Di Liu, Qinglin Chen, Pangzhen Zhang, Deli Chen, Kate Howell
Software Mentions: 5
Published: about 4 years ago

10.1111/j.1462-2920.2011.02494.x

Drivers of bacterial diversity dynamics in permeable carbonate and silicate coral reef sands from the Red Sea
Cited by: 46
Author(s): Sandra Schöttner, Barbara Pfitzner, Stefanie Grünke, Mohammed Rasheed, Christian Wild, Alban Ramette
Software Mentions: 5
Published: over 13 years ago

10.1038/s41396-018-0263-1

In situ development of a methanotrophic microbiome in deep-sea sediments
Cited by: 56
Author(s): S. Emil Ruff, Janine Felden, Harald R. Gruber‐Vodicka, Yann Marcon, Katrin Knittel, Alban Ramette, Antje Boetius
Software Mentions: 5
Published: about 6 years ago

10.7150/thno.55209

Candida albicans disorder is associated with gastric carcinogenesis
Cited by: 48
Author(s): Min Zhong, Yubo Xiong, Jiabao Zhao, Zhi Gao, Jianchao Ma, Zhengxin Wu, Yongxi Song, Xuehui Hong
Software Mentions: 5
Published: almost 4 years ago

10.1002/ece3.574

Physical disturbance shapes vascular plant diversity more profoundly than fire in the sagebrush steppe of southeastern Idaho, U.S.A
Cited by: 14
Author(s): Matt Lavin, Tyler J. Brummer, Ryan Lane. Quire, Bruce D. Maxwell, Lisa J. Rew
Software Mentions: 5
Published: over 11 years ago

10.1371/journal.pone.0208272

Quality and quantity of leaf litter: Both are important for feeding preferences and growth of an aquatic shredder
Cited by: 16
Author(s): Rebeca Arias-Real, M. Menéndez, Meritxell Abril, Francesc Oliva, Isabel Muñoz
Software Mentions: 5
Published: almost 6 years ago

10.3389/fpls.2021.694727

The Plastid-Localized AtFtsHi3 Pseudo-Protease of Arabidopsis thaliana Has an Impact on Plant Growth and Drought Tolerance
Cited by: 3
Author(s): Laxmi S. Mishra, Sanatkumar Mishra, Daniel Caddell, Devin Coleman‐Derr, Christiane Funk
Software Mentions: 5
Published: over 3 years ago

10.1002/ece3.4518

Ecological patterns in the skin microbiota of frogs from tropical Australia
Cited by: 15
Author(s): Keith A. Christian, Chava L. Weitzman, Alea Rose, Mirjam Kaestli, Karen S. Gibb
Software Mentions: 5
Published: about 6 years ago

10.1186/gb-2014-15-5-r66

Exploration of bacterial community classes in major human habitats
Cited by: 101
Author(s): Yanjiao Zhou, Kathie A. Mihindukulasuriya, Hongyu Gao, Patricio S. La Rosa, Kristine M. Wylie, John Martin, Karthik Kota, William D. Shannon, Makedonka Mitreva, Erica Sodergren, George M. Weinstock
Software Mentions: 5
Published: almost 11 years ago

10.1038/s41598-021-90489-9

Auxiliary rapid identification of pathogenic and antagonistic microorganisms associated with Coptis chinensis root rot by high-throughput sequencing
Cited by: 7
Author(s): Hailang Liao, Ling Huang, Na Li, Wenjia Ke, Yiqing Xiang, Yuntong Ma
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2019.02628

Strong Seasonality in Arctic Estuarine Microbial Food Webs
Cited by: 22
Author(s): Colleen T. E. Kellogg, J. W. McClelland, Kenneth H. Dunton, Byron C. Crump
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.447

Mobile phones carry the personal microbiome of their owners
Cited by: 127
Author(s): James F. Meadow, Adam E. Altrichter, Jessica L. Green
Software Mentions: 5
Published: over 10 years ago

10.3389/fmicb.2018.01526

Bioprospecting and Structure of Fungal Endophyte Communities Found in the Brazilian Biomes, Pantanal, and Cerrado
Cited by: 34
Author(s): Sandriele Aparecida Noriler, Daiani Cristina Savi, Rodrigo Aluízio, Angela María Palacio-Cortés, Yvelise Maria Possiede, Chirlei Glienke
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.1258

Humans differ in their personal microbial cloud
Cited by: 196
Author(s): James F. Meadow, Adam E. Altrichter, Ashley Bateman, Jason Stenson, Glen Brown, Jessica L. Green, Brendan J. M. Bohannan
Software Mentions: 5
Published: about 9 years ago

10.3389/fmicb.2016.01363

The Willow Microbiome Is Influenced by Soil Petroleum-Hydrocarbon Concentration with Plant Compartment-Specific Effects
Cited by: 46
Author(s): Stacie Tardif, Étienne Yergeau, Julien Tremblay, Pierre Legendre, Lyle G. Whyte, Charles W. Greer
Software Mentions: 5
Published: about 8 years ago

10.7717/peerj.6806

Shared genomic outliers across two divergent population clusters of a highly threatened seagrass
Cited by: 25
Author(s): Nikki Leanne Phair, Robert J. Toonen, Ingrid S. Knapp, Sophie von der Heyden
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0120605

The Unique Chemistry of Eastern Mediterranean Water Masses Selects for Distinct Microbial Communities by Depth
Cited by: 57
Author(s): Stephen M. Techtmann, Julian L. Fortney, Kati Ayers, Dominique C. Joyner, Thomas D. Linley, Susan M. Pfiffner, Terry C. Hazen
Software Mentions: 5
Published: over 9 years ago

10.3390/microorganisms7120598

Environmental Filtering Drives the Assembly of Habitat Generalists and Specialists in the Coastal Sand Microbial Communities of Southern China
Cited by: 24
Author(s): Anyi Hu, Hongjie Wang, Meixian Cao, Abbas Rashid, Mingfeng Li, Chang‐Ping Yu
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2021.658292

Cross-Talk Between Butyric Acid and Gut Microbiota in Ulcerative Colitis Following Fecal Microbiota Transplantation
Cited by: 21
Author(s): Haoming Xu, Honglan Huang, Jing Xu, Jie He, Chong Zhao, Yuling Peng, Hailan Zhao, Wenqi Huang, Chuangyu Cao, Yongjian Zhou, Yuqiang Nie
Software Mentions: 4
Published: over 3 years ago

10.1186/s40168-018-0480-x

Tracking antibiotic resistance gene pollution from different sources using machine-learning classification
Cited by: 100
Author(s): Li-Guan Li, Xiaole Yin, Tong Zhang
Software Mentions: 4
Published: over 6 years ago

10.1186/2049-2618-2-7

Bacterial communities on classroom surfaces vary with human contact
Cited by: 121
Author(s): James F. Meadow, Adam E. Altrichter, Steven W. Kembel, Maxwell Moriyama, Timothy K. O’Connor, A. M. Womack, Glen Brown, Jessica L. Green, B. J. M. Bohannan
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0047500

Differences in Soil Fungal Communities between European Beech (Fagus sylvatica L.) Dominated Forests Are Related to Soil and Understory Vegetation
Cited by: 88
Author(s): Tesfaye Wubet, Sabina Christ, Ingo Schöning, Steffen Boch, Melanie Gawlich, Beatrix Schnabel, Markus Fischer, François Buscot
Software Mentions: 4
Published: about 12 years ago

10.1371/journal.pone.0182814

Honey bee (Apis mellifera) colony health and pathogen composition in migratory beekeeping operations involved in California almond pollination
Cited by: 53
Author(s): William Glenny, Ian Cavigli, Katie F. Daughenbaugh, Rosemarie Radford, Susan E. Kegley, Michelle L. Flenniken
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0252486

Smell compounds classification using UMAP to increase knowledge of odors and molecular structures linkages
Cited by: 9
Author(s): Marylène Rugard, Thomas Jaylet, Olivier Taboureau, Anne Tromelin, Karine Audouze
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0204733

Woody species composition and diversity of riparian vegetation along the Walga River, Southwestern Ethiopia
Cited by: 20
Author(s): Misganaw Meragiaw, Zerihun Woldu, Vegard Martinsen, Bal Ram Singh
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0225859

Using baited remote underwater videos (BRUVs) to characterize chondrichthyan communities in a global biodiversity hotspot
Cited by: 20
Author(s): Geoffrey J. Osgood, Meaghen E. McCord, Julia K. Baum
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0212725

Forest fragmentation and impacts of intensive agriculture: Responses from different tree functional groups
Cited by: 5
Author(s): Juliana Cristina Tenius Ribeiro, André Felippe Nunes-Freitas, E. C. C. Fidalgo, Mariella Camardelli Uzêda
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0184062

An empirical, hierarchical typology of tree species assemblages for assessing forest dynamics under global change scenarios
Cited by: 10
Author(s): Jennifer K. Costanza, John W. Coulston, David N. Wear
Software Mentions: 4
Published: about 7 years ago

10.1002/ece3.7184

Soil physicochemical properties drive the variation in soil microbial communities along a forest successional series in a degraded wetland in northeastern China
Cited by: 27
Author(s): Xin Sui, Rongtao Zhang, Beat Frey, Libin Yang, Yingnan Liu, Hongwei Ni, Mai‐He Li
Software Mentions: 4
Published: almost 4 years ago

10.1002/ece3.7842

Characteristics and metabolic patterns of soil methanogenic archaea communities in the high‐latitude natural forested wetlands of China
Cited by: 3
Author(s): Di Wu, Caihong Zhao, Hui Bai, Fude Feng, Xin Sui, Sun Guo-rong
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2018.00169

Compost Addition Enhanced Hyphal Growth and Sporulation of Arbuscular Mycorrhizal Fungi without Affecting Their Community Composition in the Soil
Cited by: 48
Author(s): Wei Yang, Song Gu, Ying Xin, Ayodeji Bello, Wanqing Sun, Xiuhong Xu
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2016.00403

Spatial and Temporal Variation of Cultivable Communities of Co-occurring Endophytes and Pathogens in Wheat
Cited by: 58
Author(s): Morgane Comby, Sandrine Lacoste, Fabienne Baillieul, Camille Profizi, Joëlle Dupont
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2020.562546

Bacterial Communities Are More Sensitive to Water Addition Than Fungal Communities Due to Higher Soil K and Na in a Degraded Karst Ecosystem of Southwestern China
Cited by: 4
Author(s): Muhammad Umair, Ning Sun, Hongmei Du, Nan Hui, Muhammad Altaf, Baoming Du, Shan Yin, Chunjiang Liu
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2019.01562

Response of Fungal Communities and Co-occurrence Network Patterns to Compost Amendment in Black Soil of Northeast China
Cited by: 38
Author(s): Wei Yang, Xuyuan Jing, Yupeng Guan, Cheng Zhai, Tao Wang, Dengyu Shi, Wanqing Sun, Song Gu
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2017.00719

Plant Communities Rather than Soil Properties Structure Arbuscular Mycorrhizal Fungal Communities along Primary Succession on a Mine Spoil
Cited by: 66
Author(s): Claudia Krüger, Petr Kohout, Martina Janoušková, David Püschel, Jan Frouz, Jana Rydlová
Software Mentions: 4
Published: over 7 years ago

10.3389/fpls.2017.01550

Oomycete Communities Associated with Reed Die-Back Syndrome
Cited by: 13
Author(s): Martina Cerri, Rumakanta Sapkota, Andrea Coppi, Valentina Ferri, Bruno Foggi, Daniela Gigante, Lorenzo Lastrucci, Roberta Selvaggi, Roberto Venanzoni, Mogens Nicolaisen, Francesco Ferranti, Lara Reale
Software Mentions: 4
Published: about 7 years ago

10.1534/g3.116.032805

Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana)
Cited by: 45
Author(s): Daniel González-Ibeas, Pedro Manuel Martínez-García, Randi Famula, Annette Delfino-Mix, Kristian Stevens, Carol A. Loopstra, Charles H. Langley, David B. Neale, Jill L. Wegrzyn
Software Mentions: 4
Published: almost 8 years ago

10.3390/insects10120446

The Response of Neotropical Dragonflies (Insecta: Odonata) to Local and Regional Abiotic Factors in Small Streams of the Amazon
Cited by: 21
Author(s): José Max Barbosa de Oliveira, Karina Dias-Silva, Maria Alexandra Teodósio, Leandro Juen
Software Mentions: 4
Published: almost 5 years ago

10.3390/jcm8091424

Nutritional Therapy Modulates Intestinal Microbiota and Reduces Serum Levels of Total and Free Indoxyl Sulfate and P-Cresyl Sulfate in Chronic Kidney Disease (Medika Study)
Cited by: 73
Author(s): Biagio Raffaele Di Iorio, Maria Teresa Rocchetti, Maria De Angelis, Carmela Cosola, Stefania Marzocco, Lucia Di Micco, Ighli di Bari, Matteo Accetturo, Mirco Vacca, Marco Gobbetti, Mattia Di Iorio, Antonio Bellasi, Loreto Gesualdo
Software Mentions: 4
Published: about 5 years ago

10.3390/jcm10040840

Ketoanalogs’ Effects on Intestinal Microbiota Modulation and Uremic Toxins Serum Levels in Chronic Kidney Disease (Medika2 Study)
Cited by: 17
Author(s): Maria Teresa Rocchetti, Biagio Di Iorio, Mirco Vacca, Carmela Cosola, Stefania Marzocco, Ighli di Bari, Francesco Maria Calabrese, Roberto Ciarcia, Maria De Angelis, Loreto Gesualdo
Software Mentions: 4
Published: almost 4 years ago

10.1038/srep26425

The microbiomes and metagenomes of forest biochars
Cited by: 42
Author(s): Genevieve L. Noyce, C. L. Winsborough, Roberta R. Fulthorpe, Nathan Basiliko
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0117630

Small but Powerful: Top Predator Local Extinction Affects Ecosystem Structure and Function in an Intermittent Stream
Cited by: 30
Author(s): Pablo Rodríguez‐Lozano, Iraima Verkaik, María Rieradevall, Narcı́s Prat
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0227819

Microbiota in foods from Inuit traditional hunting
Cited by: 11
Author(s): Aviaja Zenia Edna Lyberth Hauptmann, Petronela Paulová, Lars Hestbjerg Hansen, Thomas Sicheritz-Pontén, Gert Mulvad, Dennis Sandris Nielsen
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0193369

Edge effects and beta diversity in ground and canopy beetle communities of fragmented subtropical forest
Cited by: 9
Author(s): Marisa J. Stone, Carla Catterall, Nigel E. Stork
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-51221-w

Winter warming is ecologically more relevant than summer warming in a cool-temperate grassland
Cited by: 33
Author(s): Jüergen Kreyling, Kerstin Grant, Verena Hammerl, Mohammed Abu Sayed Arfin Khan, Andrey V. Malyshev, Josep Peñuelas, Karin Pritsch, Jordi Sardans, Michael Schloter, Jan Schuerings, Anke Jentsch, Carl Beierkuhnlein
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0247966

Relationships between topographic factors, soil and plant communities in a dry Afromontane forest patches of Northwestern Ethiopia
Cited by: 12
Author(s): Liyew Birhanu, Tamrat Bekele, Binyam Tesfaw, Sebsebe Demissew
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0213823

Natural and human-impacted diversity of bryophytes along an elevational gradient on an oceanic island (La Palma, Canarias)
Cited by: 4
Author(s): Raquel Hernández‐Hernández, Jürgen Kluge, Claudine Ah‐Peng, Juana María González‐Mancebo
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0107534

Application of Ion Torrent Sequencing to the Assessment of the Effect of Alkali Ballast Water Treatment on Microbial Community Diversity
Cited by: 22
Author(s): Masanori Fujimoto, Gregory A Moyerbrailean, Sifat Noman, Jason P. Gizicki, Michal L. Ram, Phyllis A. Green, Jeffrey L. Ram
Software Mentions: 3
Published: about 10 years ago

10.1002/ece3.4922

Partitioning the effects of regional, spatial, and local variables on beta diversity of salt marsh arthropods in Chile
Cited by: 12
Author(s): Cristina Coccia, José Miguel Fariña
Software Mentions: 3
Published: almost 6 years ago

10.1002/ece3.7820

Pitfall trap design affects the capture efficiency of harvestmen (Opiliones) and millipedes (Diplopoda)
Cited by: 1
Author(s): Slavomír Stašiov, Marek Čiliak, Michal Wiezik, Marek Svitok, Adela Wieziková, Andrea Diviaková
Software Mentions: 3
Published: over 3 years ago

10.1002/ece3.6344

Sika deer presence affects the host–parasite interface of a Japanese land leech
Cited by: 6
Author(s): Kaori Morishima, Takafumi Nakano, Mineaki Aizawa
Software Mentions: 3
Published: over 4 years ago

10.3389/fcimb.2018.00046

Influence of Novel Highly Pathogenic Avian Influenza A (H5N1) Virus Infection on Migrating Whooper Swans Fecal Microbiota
Cited by: 18
Author(s): Na Zhao, Supen Wang, Hongyi Li, Shelan Liu, Meng Li, Jing Luo, Wen Su, Hongxuan He
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0149564

Characterization of the Gut Microbial Community of Obese Patients Following a Weight-Loss Intervention Using Whole Metagenome Shotgun Sequencing
Cited by: 197
Author(s): Sandrine Louis, Rewati-Mukund Tappu, Antje Damms-Machado, Daniel H. Huson, Stephan C. Bischoff
Software Mentions: 3
Published: over 8 years ago

10.7717/peerj.8683

Patterns of change in α and β taxonomic and phylogenetic diversity in the secondary succession of semi-natural grasslands in the Northern Apennines
Cited by: 6
Author(s): Lorenzo Lazzaro, Lorenzo Lastrucci, Daniele Viciani, Renato Benesperi, Vincenzo Gonnelli, Andrea Coppi
Software Mentions: 3
Published: over 4 years ago

10.1128/AEM.02307-20

Dynamic Gut Microbiome Changes in Response to Low-Iron Challenge
Cited by: 15
Author(s): Genevieve Coe, Nicholas V. Pinkham, Arianna I. Celis, Christina Johnson, Jennifer L. DuBois, Seth T. Walk
Software Mentions: 3
Published: almost 4 years ago

10.7717/peerj.53

Significant changes in the skin microbiome mediated by the sport of roller derby
Cited by: 77
Author(s): James F. Meadow, Ashley Bateman, Keith M. Herkert, Timothy K. O’Connor, Jessica L. Green
Software Mentions: 3
Published: over 11 years ago

10.1093/aobpla/plab036

Limited ant co-occurrence and defensive mutualism inAcaciaplants in a West African savanna
Cited by: 1
Author(s): Anyse Djogbenou, Akomian Fortuné Azihou, Anicet Gbèblonoudo Dassou, Achille Ephrem Assogbadjo, Barthélémy Kassa, Orou G. Gaoue
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2019.00653

Benthic Diatom Communities in an Alpine River Impacted by Waste Water Treatment Effluents as Revealed Using DNA Metabarcoding
Cited by: 42
Author(s): Teofana Chonova, Rainer Kurmayer, Frédéric Rimet, Jérôme Labanowski, Valentin Vasselon, François Keck, Paul Illmer, Agnès Bouchez
Software Mentions: 3
Published: over 5 years ago

10.1007/s13280-020-01343-7

Ecosystem restoration in fire-managed savanna woodlands: Effects on biodiversity, local livelihoods and fire intensity
Cited by: 8
Author(s): Maria U. Johansson, Firew Bekele Abebe, Sileshi Nemomissa, Tamrat Bekele, Kristoffer Hylander
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2018.01745

Gut Microbiota in Tibetan Herdsmen Reflects the Degree of Urbanization
Cited by: 22
Author(s): Huan Li, Tongtong Li, Xiangzhen Li, Guan-Hong Wang, Qiang Lin, Jiapeng Qu
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2020.557980

Environmental Nutrients Alter Bacterial and Fungal Gut Microbiomes in the Common Meadow Katydid, Orchelimum vulgare
Cited by: 7
Author(s): Melani K. Muratore, Yvonne Sun, Chelse M. Prather
Software Mentions: 3
Published: about 4 years ago

10.3389/fmicb.2014.00668

Contrasting assembly processes in a bacterial metacommunity along a desiccation gradient
Cited by: 28
Author(s): Ángel Valverde, Thulani P. Makhalanyane, Don A. Cowan
Software Mentions: 3
Published: almost 10 years ago

10.3390/ani10122352

Divergence in Gut Bacterial Community Structure between Male and Female Stag Beetles Odontolabis fallaciosa (Coleoptera, Lucanidae)
Cited by: 4
Author(s): Xia Wan, Yu Jiang, Yiyi Cao, Binghua Sun, Xingjia Xiang
Software Mentions: 3
Published: almost 4 years ago

10.1002/mbo3.1185

Short‐term exposure to synthetic flaxseed lignan LGM2605 alters gut microbiota in mice
Cited by: 4
Author(s): Reagan Badger, Ken Aho, Kinta M. Serve
Software Mentions: 3
Published: over 3 years ago

Projects: cran: labdsv

Papers Mentioning labdsv 161