Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: learn
https://packages.ecosyste.ms/registries/pypi.org/packages/learn
A simple printer of nested lines
1 version
Latest release: about 11 years ago
1,116 downloads last month
Papers Mentioning learn 154
10.1093/bioinformatics/btab039
mlr3proba: an R package for machine learning in survival analysisCited by: 38
Author(s): Raphael Sonabend, Franz J. Király, Andreas Bender, Bernd Bischl, Michel Lang
Software Mentions: 18
Published: almost 4 years ago
10.7554/eLife.55913
An image-based data-driven analysis of cellular architecture in a developing tissueCited by: 22
Author(s): Jonas Hartmann, Mie Wong, Elisa Cristina de Proença Rodrigues Gallo, Darren Gilmour
Software Mentions: 14
Published: over 4 years ago
10.1002/cam4.4092
Gene signatures predict biochemical recurrence‐free survival in primary prostate cancer patients after radical therapyCited by: 6
Author(s): Qiang Su, Zhenyu Liu, Chi Chen, Han Gao, Yongbei Zhu, Liusu Wang, Meiqing Pan, Jiangang Liu, Xin Yang, Jie Tian
Software Mentions: 12
Published: about 3 years ago
10.1093/molbev/msaa128
Evolution of the Insecticide Target Rdl in African Anopheles Is Driven by Interspecific and Interkaryotypic IntrogressionCited by: 25
Author(s): Xavier Grau‐Bové, Sean Tomlinson, Andrias O. O’Reilly, Nicholas J. Harding, Alistair Miles, Dominic Kwiatkowski, Martin Donnelly, David Weetman
Software Mentions: 12
Published: over 4 years ago
10.3390/ani11072131
Predicting Subclinical Ketosis in Dairy Cows Using Machine Learning TechniquesCited by: 7
Author(s): Alicja Satoła, Edyta Bauer
Software Mentions: 12
Published: over 3 years ago
10.1371/journal.pcbi.1009136
Multidimensional analysis and detection of informative features in human brain white matterCited by: 14
Author(s): Adam Richie-Halford, Jason D. Yeatman, Noah Simon, Ariel Rokem
Software Mentions: 12
Published: over 3 years ago
10.15252/msb.20209522
Neural G0: a quiescent‐like state found in neuroepithelial‐derived cells and gliomaCited by: 19
Author(s): Samantha O'Connor, Heather Feldman, Sonali Arora, Pia Hoellerbauer, Chad M. Toledo, Philip Corrin, Lucas Carter, Megan Kufeld, Hamid Bolouri, Ryan Basom, Jeffrey J. Delrow, José L. McFaline-Figueroa, Cole Trapnell, Steven M. Pollard, Anoop P. Patel, Patrick J. Paddison, Christopher Plaisier
Software Mentions: 10
Published: over 3 years ago
10.3389/fnins.2019.00494
Automated, Efficient, and Accelerated Knowledge Modeling of the Cognitive Neuroimaging Literature Using the ATHENA ToolkitCited by: 6
Author(s): Michael C. Riedel, Taylor Salo, Jason Hays, Matthew D. Turner, Matthew T. Sutherland, Jessica A. Turner, Angela R. Laird
Software Mentions: 10
Published: over 5 years ago
10.1002/ece3.6594
A total crapshoot? Evaluating bioinformatic decisions in animal diet metabarcoding analysesCited by: 36
Author(s): Devon O’Rourke, Nicholas A. Bokulich, Michelle A. Jusino, Matthew D. MacManes, Jeffrey T. Foster
Software Mentions: 10
Published: over 4 years ago
10.3389/fcimb.2020.00137
Microbiotyping the Sinonasal MicrobiomeCited by: 15
Author(s): Ahmed Bassiouni, S. Paramasivan, Arron Shiffer, Matthew R. Dillon, Emily K. Cope, Clare Cooksley, Mahnaz Ramezanpour, Sophia Moraitis, Mohammad Javed Ali, Benjamin S. Bleier, Claudio Callejas, Marjolein Cornet, Richard Douglas, Daniel Lorena Dutra, Christos Georgalas, Richard J. Harvey, Peter H. Hwang, Amber U. Luong, Rodney J. Schlosser, Pongsakorn Tantilipikorn, Marc A. Tewfik, Sarah Vreugde, Peter John Wormald, J. Gregory Caporaso, Alkis James Psaltis
Software Mentions: 9
Published: over 4 years ago
10.26508/lsa.202000757
multicrispr: gRNA design for prime editing and parallel targeting of thousands of targetsCited by: 16
Author(s): Aditya Bhagwat, Johannes Graumann, René Wiegandt, Mette Bentsen, Jordan M. Welker, Carsten Kuenne, Jens Preussner, Thomas Braun, Mario Looso
Software Mentions: 9
Published: about 4 years ago
10.3389/fimmu.2021.592303
Machine Learning Identifies Complicated Sepsis Course and Subsequent Mortality Based on 20 Genes in Peripheral Blood Immune Cells at 24 H Post-ICU AdmissionCited by: 35
Author(s): Shayantan Banerjee, Akram Mohammed, Hector R. Wong, Nades Palaniyar, Rishikesan Kamaleswaran
Software Mentions: 9
Published: over 3 years ago
10.1186/s12911-021-01459-0
Transformers-sklearn: a toolkit for medical language understanding with transformer-based modelsCited by: 14
Author(s): Feihong Yang, Xuwen Wang, Hetong Ma, Jiao Li
Software Mentions: 9
Published: over 3 years ago
10.15252/msb.20209667
Using single‐plant‐omics in the field to link maize genes to functions and phenotypesCited by: 17
Author(s): Daniel Felipe Cruz, Sam Meyer, Joke Ampe, Heike Sprenger, Dorota Herman, Tom Van Hautegem, Jolien De Block, Dirk Inzé, Hilde Nelissen, Steven Maere
Software Mentions: 8
Published: almost 4 years ago
10.3389/fgene.2021.651812
MRPC: An R Package for Inference of Causal GraphsCited by: 2
Author(s): Md. Bahadur Badsha, Evan A Martin, Audrey Qiuyan Fu
Software Mentions: 7
Published: over 3 years ago
10.1186/s12859-021-04126-3
Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sourcesCited by: 6
Author(s): Neel Patel, William S. Bush
Software Mentions: 7
Published: over 3 years ago
10.3390/nu11123045
Nutrient Estimation from 24-Hour Food Recalls Using Machine Learning and Database Mapping: A Case Study with LactoseCited by: 20
Author(s): Elizabeth Chin, Gabriel Simmons, Yasmine Bouzid, Annie Kan, D. D. Burnett, Ilias Tagkopoulos, Danielle G. Lemay
Software Mentions: 7
Published: almost 5 years ago
10.1371/journal.pcbi.1007553
Scalable phylogenetic profiling using MinHash uncovers likely eukaryotic sexual reproduction genesCited by: 18
Author(s): David Moi, Laurent Kilchoer, Pablo S. Aguilar, Christophe Dessimoz
Software Mentions: 6
Published: over 4 years ago
10.3389/fmicb.2021.665849
Decisive Effects of Life Stage on the Gut Microbiota Discrepancy Between Two Wild Populations of Hibernating Asiatic Toads (Bufo gargarizans)Cited by: 3
Author(s): Xuehang Song, Jingwei Zhang, Jinghan Song, Yuanyuan Zhai
Software Mentions: 6
Published: over 3 years ago
10.3390/brainsci10110851
Functional and Structural Connectome Features for Machine Learning Chemo-Brain Prediction in Women Treated for Breast Cancer with ChemotherapyCited by: 4
Author(s): Vincent Chin‐Hung Chen, Tung-Yeh Lin, Dah-Cherng Yeh, Jyh‐Wen Chai, Jun‐Cheng Weng
Software Mentions: 6
Published: almost 4 years ago
10.1016/j.cell.2016.09.027
Molecular Diversity of Midbrain Development in Mouse, Human, and Stem CellsCited by: 620
Author(s): Gioele La Manno, Daniel Gyllborg, Simone Codeluppi, Kaneyasu Nishimura, Carmen Saltó, Amit Zeisel, Lars E. Borm, Simon Stott, Enrique M. Toledo, J. Carlos Villaescusa, Peter Lönnerberg, Jesper Ryge, Roger A. Barker, Ernest Arenas, Sten Linnarsson
Software Mentions: 6
Published: about 8 years ago
10.15252/emmm.202013257
Urinary proteome profiling for stratifying patients with familial Parkinson’s diseaseCited by: 66
Author(s): Sebastian Virreira Winter, Özge Karayel, Mike Strauss, Shalini Padmanabhan, Matthew Surface, Kalpana Merchant, Matthias Mann
Software Mentions: 6
Published: almost 4 years ago
10.1186/s12933-019-0879-0
Machine-learning to stratify diabetic patients using novel cardiac biomarkers and integrative genomicsCited by: 45
Author(s): Quincy A. Hathaway, Skyler M. Roth, Mark V. Pinti, Daniel C. Sprando, Amina Kunovac, Andrya J. Durr, Chris C. Cook, Garrett K. Fink, Tristen B. Cheuvront, Jasmine H. Grossman, Ghadah A. Aljahli, Andrew Taylor, Andrew Giromini, Jessica L. Allen, John M. Hollander
Software Mentions: 6
Published: over 5 years ago
10.1038/s41598-021-90335-y
Whole brain functional recordings at cellular resolution in zebrafish larvae with 3D scanning multiphoton microscopyCited by: 15
Author(s): Matteo Bruzzone, Enrico Chiarello, Marco Albanesi, Maria Elena Miletto Petrazzini, Aram Megighian, Claudia Lodovichi, Marco Dal Maschio
Software Mentions: 6
Published: over 3 years ago
10.15252/msb.20198871
Paralog dependency indirectly affects the robustness of human cellsCited by: 40
Author(s): Rohan Dandage, Christian R. Landry
Software Mentions: 6
Published: about 5 years ago
10.1186/s12911-017-0518-1
Word2Vec inversion and traditional text classifiers for phenotyping lupusCited by: 49
Author(s): Clayton A. Turner, Alexander Jacobs, Cassios K. Marques, Jim C. Oates, Diane L. Kamen, Paul E. Anderson, Jihad S. Obeid
Software Mentions: 6
Published: about 7 years ago
10.1002/minf.202000005
Using Machine Learning Methods and Structural Alerts for Prediction of Mitochondrial ToxicityCited by: 30
Author(s): Jennifer Hemmerich, Florentina Troger, Barbara Füzi, Gerhard Ecker
Software Mentions: 6
Published: over 4 years ago
10.3389/fmicb.2020.596589
The Transition From Stochastic to Deterministic Bacterial Community Assembly During Permafrost Thaw SuccessionCited by: 24
Author(s): Stacey J. Doherty, Robyn A. Barbato, A. Stuart Grandy, W. Kelley Thomas, Sylvain Monteux, Ellen Dorrepaal, Margareta Johansson, Jessica G. Ernakovich
Software Mentions: 5
Published: almost 4 years ago
10.1371/journal.pone.0144820
CloudForest: A Scalable and Efficient Random Forest Implementation for Biological DataCited by: 2
Author(s): Ryan Bressler, Richard Kreisberg, Brady Bernard, John E. Niederhuber, Joseph G. Vockley, Ilya Shmulevich, Theo Knijnenburg
Software Mentions: 5
Published: almost 9 years ago
10.1371/journal.pone.0204920
Predicting acute kidney injury at hospital re-entry using high-dimensional electronic health record dataCited by: 8
Author(s): Samuel J. Weisenthal, Caroline M. Quill, Samir A. Farooq, Henry Kautz, Martin S. Zand
Software Mentions: 5
Published: almost 6 years ago
10.1039/d0sc04263c
One class classification as a practical approach for accelerating π–π co-crystal discoveryCited by: 12
Author(s): Aikaterini Vriza, Angelos B. Canaj, Rebecca Vismara, Laurence J. Kershaw Cook, Troy D. Manning, Michael W. Gaultois, Peter A. Wood, Vitaliy Kurlin, Neil G. Berry, Matthew S. Dyer, Matthew J. Rosseinsky
Software Mentions: 5
Published: almost 4 years ago
10.1128/mSystems.00093-19
Randomized Lasso Links Microbial Taxa with Aquatic Functional Groups Inferred from Flow CytometryCited by: 14
Author(s): Peter Rubbens, Marian L. Schmidt, Ruben Props, Bopaiah A. Biddanda, Nico Boon, Willem Waegeman, Vincent J. Denef
Software Mentions: 5
Published: about 5 years ago
10.1038/s41598-021-88939-5
GPCR_LigandClassify.py; a rigorous machine learning classifier for GPCR targeting compoundsCited by: 6
Author(s): Marawan Ahmed, Horia Jalily Hasani, Subha Kalyaanamoorthy, Khaled Barakat
Software Mentions: 5
Published: over 3 years ago
10.3390/ijms21197281
SPOTONE: Hot Spots on Protein Complexes with Extremely Randomized Trees via Sequence-Only FeaturesCited by: 10
Author(s): António Preto, Irina S. Moreira
Software Mentions: 5
Published: about 4 years ago
10.3390/microorganisms8010134
Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp MicrobiotaCited by: 34
Author(s): Rodrigo García-López, Fernanda Cornejo‐Granados, Alonso A. López-Zavala, Filiberto Sánchez-López, Andrés Cota-Huízar, Rogerio R. Sotelo‐Mundo, Abraham Guerrero, Alfredo Mendoza-Vargas, Bruno Gómez‐Gil, Adrián Ochoa-Leyva
Software Mentions: 5
Published: almost 5 years ago
10.1186/s13321-017-0232-0
Beyond the hype: deep neural networks outperform established methods using a ChEMBL bioactivity benchmark setCited by: 207
Author(s): Eelke B. Lenselink, Niels ten Dijke, Brandon J. Bongers, George Papadatos, Herman van Vlijmen, Wojtek Kowalczyk, Adriaan P. IJzerman, Gerard J. P. van Westen
Software Mentions: 5
Published: about 7 years ago
10.15252/msb.202010138
Natural variants suppress mutations in hundreds of essential genesCited by: 10
Author(s): Leopold Parts, Amandine Batté, Maykel Lopes, Michael Wai-Keong Yuen, Meredith Laver, Bryan-Joseph San Luis, Jia-Xing Yue, Carles Pons, Elise Eray, Patrick Aloy, Gianni Liti, Jolanda van Leeuwen
Software Mentions: 5
Published: over 3 years ago
10.15252/msb.20167490
Integration of over 9,000 mass spectrometry experiments builds a global map of human protein complexesCited by: 163
Author(s): Kevin Drew, Chanjae Lee, Ryan L. Huizar, Fan Tu, Blake Borgeson, Claire D. McWhite, Yun Ma, John B. Wallingford, Edward M. Marcotte
Software Mentions: 5
Published: over 7 years ago
10.15252/msb.20199270
Pyruvate kinase variant of fission yeast tunes carbon metabolism, cell regulation, growth and stress resistanceCited by: 22
Author(s): Stephan Kamrad, Jan Großbach, María Rodríguez-López, Michael Mülleder, StJohn Townsend, Valentina Cappelletti, Gorjan Stojanovski, Clara Correia‐Melo, Paola Picotti, Andreas Beyer, Markus Ralser, Jürg Bähler
Software Mentions: 5
Published: over 4 years ago
10.1002/hbm.25368
Brain age prediction: A comparison between machine learning models using region‐ and voxel‐based morphometric dataCited by: 52
Author(s): Lea Baecker, Jessica Dafflon, Pedro F. da Costa, Rafael Garcia‐Dias, Sandra Vieira, Cristina Scarpazza, Vince D. Calhoun, João Ricardo Sato, Andrea Mechelli, Walter Hugo Lopez Pinaya
Software Mentions: 5
Published: over 3 years ago
10.1186/s13059-021-02294-2
seqQscorer: automated quality control of next-generation sequencing data using machine learningCited by: 9
Author(s): Steffen Albrecht, Maximilian Sprang, Miguel A. Andrade‐Navarro, Jean-Fred Fontaine
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0234908
Machine learning and natural language processing methods to identify ischemic stroke, acuity and location from radiology reportsCited by: 59
Author(s): Charlene Ong, Agni Orfanoudaki, Rebecca Zhang, Francois Pierre M. Caprasse, Meghan R. Hutch, Liang Ma, Darian Fard, Oluwafemi Balogun, Matthew Miller, Margaret A. Minnig, Hanife Saglam, Brenton Prescott, David M. Greer, Stelios M. Smirnakis, Dimitris Bertsimas
Software Mentions: 5
Published: over 4 years ago
10.3390/s21082728
Virtual Sensing and Sensors Selection for Efficient Temperature Monitoring in Indoor EnvironmentsCited by: 13
Author(s): Andrea Brunello, Andrea Urgolo, Federico Pittino, András Montvay, Angelo Montanari
Software Mentions: 4
Published: over 3 years ago
10.1002/aps3.1238
Phenotypic variation of cassava root traits and their responses to droughtCited by: 27
Author(s): Jitrana Kengkanna, Phissinee Jakaew, Suwaluk Amawan, Natalie Busener, Alexander Bucksch, Patompong Saengwilai
Software Mentions: 4
Published: over 5 years ago
10.1101/2021.03.17.435863
Mutational escape from the polyclonal antibody response to SARS-CoV-2 infection is largely shaped by a single class of antibodiesCited by: 31
Author(s): Allison J Greaney, Tyler N Starr, Christopher O. Barnes, Yiska Weisblum, Fabian Schmidt, Marina Caskey, Christian Gaebler, Alice Cho, Marianna Agudelo, Shlomo Finkin, Zijun Wang, Daniel Poston, Frauke Muecksch, Théodora Hatziioannou, Paul D. Bieniasz, Davide F. Robbiani, Michel C. Nussenzweig, Pamela J. Björkman, Jesse D. Bloom
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-019-39142-0
Unlocking HDR-mediated nucleotide editing by identifying high-efficiency target sites using machine learningCited by: 30
Author(s): Aidan O’Brien, Laurence O.W. Wilson, Gaétan Burgio, Denis C. Bauer
Software Mentions: 4
Published: over 5 years ago
10.1002/advs.201902862
Gut Microbial Signatures Can Discriminate Unipolar from Bipolar DepressionCited by: 75
Author(s): Peng Zheng, Jian Yang, Yifan Li, Jing Wu, Weiwei Liang, Bangmin Yin, Xunmin Tan, Yu Huang, Tingjia Chai, Hanping Zhang, Jiajia Duan, Jingjing Zhou, Zuoli Sun, Chen Xu, Subhi Marwari, Jianbo Lai, Tingting Huang, Yanli Du, Peifen Zhang, Seth W. Perry, Ma‐Li Wong, Júlio Licinio, Shaohua Hu, Peng Xie, Gang Wang
Software Mentions: 4
Published: over 4 years ago
10.3389/fncom.2020.580632
DNNBrain: A Unifying Toolbox for Mapping Deep Neural Networks and BrainsCited by: 11
Author(s): Xiayu Chen, Ming Zhou, Zhengxin Gong, Wei Xu, Xingyu Liu, Taicheng Huang, Zonglei Zhen, Jia Liu
Software Mentions: 4
Published: almost 4 years ago
10.15252/msb.20199356
Proteome profiling in cerebrospinal fluid reveals novel biomarkers of Alzheimer's diseaseCited by: 129
Author(s): Jakob Bader, Philipp E. Geyer, Johannes B. Müller-Reif, Maximilian T. Strauss, Manja Koch, Frank Leypoldt, Pèter Köertvelyessy, Daniel Bittner, Carola G. Schipke, Enise I. Incesoy, Oliver Peters, Nikolaus Deigendesch, Mikael Simons, Majken K. Jensen, Henrik Zetterberg, Matthias Mann
Software Mentions: 4
Published: over 4 years ago
10.1111/tpj.14312
μ<scp>CT</scp> trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relativesCited by: 19
Author(s): Nathan Hughes, Hugo R. Oliveira, Nick Fradgley, Fiona Corke, James Cockram, John H. Doonan, Cândida Nibau
Software Mentions: 4
Published: over 5 years ago
10.1002/hbm.25144
High‐density intracranial recordings reveal a distinct site in anterior dorsal precentral cortex that tracks perceived speechCited by: 10
Author(s): Julia Berezutskaya, Clarissa Baratin, Zachary V. Freudenburg, N.F. Ramsey
Software Mentions: 4
Published: over 4 years ago
10.1111/jcmm.15441
Molecular classification and immunologic characteristics of immunoreactive high‐grade serous ovarian cancerCited by: 1
Author(s): Zheran Liu, Huimeng Wu, Jiachen Deng, Haoqing Wang, Zixuan Wang, An‐Gang Yang, Bowen Liang, Ji Luo, Jianyong Li, Ye Xu, Xiaoli Tang, Fang Fu, Libin Deng
Software Mentions: 4
Published: over 4 years ago
10.3390/s17010066
A Comparison Study of Classifier Algorithms for Cross-Person Physical Activity RecognitionCited by: 29
Author(s): Yago Sáez, Alejandro Baldominos, Pedro Isasi
Software Mentions: 4
Published: almost 8 years ago
10.3390/s20174940
Application of Convolutional Neural Network-Based Feature Extraction and Data Fusion for Geographical Origin Identification of Radix Astragali by Visible/Short-Wave Near-Infrared and Near Infrared Hyperspectral ImagingCited by: 19
Author(s): Qinlin Xiao, Xiulin Bai, Pan Gao, Yong He
Software Mentions: 4
Published: about 4 years ago
10.3390/s21175896
Enhanced Changeover Detection in Industry 4.0 Environments with Machine LearningCited by: 4
Author(s): Eddi Miller, Vladyslav Borysenko, Moritz Heusinger, Niklas Niedner, Bastian Engelmann, Jan Schmitt
Software Mentions: 3
Published: about 3 years ago
10.1002/aps3.11380
Digitally deconstructing leaves in 3D using X‐ray microcomputed tomography and machine learningCited by: 20
Author(s): Guillaume Théroux‐Rancourt, Matthew R. Jenkins, Craig R. Brodersen, Andrew J. McElrone, Elisabeth J. Forrestel, J. Mason Earles
Software Mentions: 3
Published: over 4 years ago
10.1186/s13062-019-0257-6
Diverse approaches to predicting drug-induced liver injury using gene-expression profilesCited by: 18
Author(s): G Rex Sumsion, Michael S. Bradshaw, Jeremy Beales, Emi Ford, Griffin R. G. Caryotakis, Daniel J. Garrett, Emily D. LeBaron, Ifeanyichukwu O. Nwosu, Stephen R. Piccolo
Software Mentions: 3
Published: almost 5 years ago
10.3390/bios9010029
Differentiation of Patients with Balance Insufficiency (Vestibular Hypofunction) versus Normal Subjects Using a Low-Cost Small Wireless Wearable Gait SensorCited by: 9
Author(s): Tam Nguyên, Jonathan H. Young, Amanda Rodriguez, Steven Zupancic, Donald Y. C. Lie
Software Mentions: 3
Published: over 5 years ago
10.1002/cam4.2233
Toward automatic prediction of <i>EGFR</i> mutation status in pulmonary adenocarcinoma with 3D deep learningCited by: 72
Author(s): Wei Zhao, Jiancheng Yang, Bingbing Ni, Dexi Bi, Yingli Sun, Min Xu, Xiaoxia Zhu, Cheng Li, Liang Jin, Pan Gao, Peijun Wang, Yanqing Hua, Ming Li
Software Mentions: 3
Published: over 5 years ago
10.1186/s40168-020-00900-2
Ultrafast and accurate 16S rRNA microbial community analysis using Kraken 2Cited by: 115
Author(s): Jennifer Lu, Steven L. Salzberg
Software Mentions: 3
Published: about 4 years ago
10.1111/mpp.12877
Show me your secret(ed) weapons: a multifaceted approach reveals a wide arsenal of type III‐secreted effectors in the cucurbit pathogenic bacterium <i>Acidovorax citrulli</i> and novel effectors in the <i>Acidovorax</i> genusCited by: 26
Author(s): Irene Jiménez‐Guerrero, Francisco Pérez‐Montaño, Gustavo Mateus da Silva, Naama Wagner, Dafna Shkedy, Mei Zhao, Lorena Pizarro, Maya Bar, R. R. Walcott, Guido Sessa, Tal Pupko, Saul Burdman
Software Mentions: 3
Published: about 5 years ago
10.15252/msb.202110243
Tensor‐structured decomposition improves systems serology analysisCited by: 9
Author(s): Zhixin Cyrillus Tan, Madeleine C Murphy, Hakan S Alpay, Scott D Taylor, Aaron S. Meyer
Software Mentions: 3
Published: about 3 years ago
10.15252/msb.20188557
<i>De novo</i> gene signature identification from single‐cell <scp>RNA</scp> ‐seq with hierarchical Poisson factorizationCited by: 75
Author(s): Hanna Mendes Levitin, Jinzhou Yuan, Yim Ling Cheng, Francisco J. R. Ruiz, Erin C. Bush, Jeffrey N. Bruce, Peter Canoll, Antonio Iavarone, Anna Lasorella, David M. Blei, Peter A. Sims
Software Mentions: 3
Published: almost 6 years ago
10.3390/plants9020174
Using Rapid Chlorophyll Fluorescence Transients to Classify Vitis GenotypesCited by: 8
Author(s): Jorge Marques da Silva, Andreia Figueiredo, Jorge Cunha, José Eduardo Eiras-Dias, Sara Silva, Leonardo Vanneschi, Pedro Mariano
Software Mentions: 3
Published: almost 5 years ago
10.1002/ece3.7929
Assessing age, breeding stage, and mating activity as drivers of variation in the reproductive microbiome of female tree swallowsCited by: 6
Author(s): Jessica Hernandez, Catherine Hucul, Emily Reasor, Taryn J Smith, Joel W. McGlothlin, David C. Haak, Lisa K. Belden, Ignacio T. Moore
Software Mentions: 3
Published: over 3 years ago
10.1002/ece3.5963
Gut microbiota in reintroduction of giant pandaCited by: 16
Author(s): Jingsi Tang, Chengdong Wang, Hemin Zhang, Jiangchao Zhao, Wei Guo, Saurabh Mishra, Fanli Kong, Bo Zeng, Ruihong Ning, Desheng Li, Jiandong Yang, Mingyao Yang, Mingwang Zhang, Qingyong Ni, Yan Li, Ying Liu
Software Mentions: 3
Published: almost 5 years ago
10.3390/e22111274
Minimum Spanning vs. Principal Trees for Structured Approximations of Multi-Dimensional DatasetsCited by: 3
Author(s): Alexander Chervov, Jonathan Bac, Andreï Zinovyev
Software Mentions: 3
Published: almost 4 years ago
10.1002/fsn3.1484
Rapid identification of chrysanthemum teas by computer vision and deep learningCited by: 16
Author(s): Chunlin Li, Weiying Lu, Boyan Gao, Hanae Kimura, Yanfang Li, Jing Wang
Software Mentions: 3
Published: over 4 years ago
10.3389/fncir.2020.00042
Automated Curation of CNMF-E-Extracted ROI Spatial Footprints and Calcium Traces Using Open-Source AutoML ToolsCited by: 9
Author(s): Lina M. Tran, Andrew J. Mocle, Adam I. Ramsaran, Alexander D. Jacob, Paul W. Frankland, Sheena A. Josselyn
Software Mentions: 3
Published: over 4 years ago
10.1007/s11357-020-00297-8
Plasma dilution improves cognition and attenuates neuroinflammation in old miceCited by: 33
Author(s): Melod Mehdipour, Taha Mehdipour, Colin M. Skinner, Nathan Wong, Chao Liu, Chia Chien Chen, Ok Hee Jeon, Yi Zuo, Michael J. Conboy, Irina M. Conboy
Software Mentions: 3
Published: almost 4 years ago
10.1002/hbm.25152
The maternal brain: Region‐specific patterns of brain aging are traceable decades after childbirthCited by: 42
Author(s): Ann-Marie G. de Lange, Cláudia Barth, Tobias Kaufmann, Melis Anatürk, Sana Suri, Klaus P. Ebmeier, Lars T. Westlye
Software Mentions: 3
Published: about 4 years ago
10.1002/hbm.25589
Dyconnmap: Dynamic connectome mapping—A neuroimaging python moduleCited by: 6
Author(s): Avraam D. Marimpis, Stavros I. Dimitriadis, Rainer Goebel
Software Mentions: 3
Published: over 3 years ago
10.1186/s42238-020-00028-y
Relationship among subjective responses, flavor, and chemical composition across more than 800 commercial cannabis varietiesCited by: 12
Author(s): Alethia de la Fuente, Federico Zamberlán, Andrés Sánchez Ferrán, Facundo Carrillo, Enzo Tagliazucchi, Carla Pallavicini
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-019-48872-0
Multi-study reanalysis of 2,213 acute myeloid leukemia patients reveals age- and sex-dependent gene expression signaturesCited by: 12
Author(s): Raeuf Roushangar, George I. Mias
Software Mentions: 3
Published: about 5 years ago
10.1038/s41598-021-87876-7
Quantitative imaging of membrane contact sites for sterol transfer between endo-lysosomes and mitochondria in living cellsCited by: 12
Author(s): Alice Dupont Juhl, Christian W. Heegaard, Stephan Werner, Gerd Schneider, Kathiresan Krishnan, Douglas F. Covey, Daniel Wüstner
Software Mentions: 3
Published: over 3 years ago
10.12688/f1000research.8001.1
Chromas from chromatin: sonification of the epigenomeCited by: 2
Author(s): Davide Cittaro, Dejan Lazarevic, Paolo Provero
Software Mentions: 2
Published: over 8 years ago
10.1002/cyto.a.23794
Label‐Free Identification of White Blood Cells Using Machine LearningCited by: 62
Author(s): Mariam Nassar, Minh Doan, Andrew Filby, Olaf Wolkenhauer, Darin K. Fogg, Justyna Piasecka, Catherine A. Thornton, Anne E. Carpenter, Huw D. Summers, Paul Rees, Holger Hennig
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0234904
Development and validation of a robotic multifactorial fall-risk predictive model: A one-year prospective study in community-dwelling older adultsCited by: 20
Author(s): Alberto Cella, Alice De Luca, Valentina Squeri, Sara Parodi, Francesco Vallone, Angela Giorgeschi, Barbara Senesi, Ekaterini Zigoura, Katerin Leslie Quispe Guerrero, Giacomo Siri, Lorenzo De Michieli, Jody A. Saglia, Carlo Sanfilippo, Alberto Pilotto
Software Mentions: 2
Published: over 4 years ago
10.3389/fnhum.2019.00457
Revealing Relationships Among Cognitive Functions Using Functional Connectivity and a Large-Scale Meta-Analysis DatabaseCited by: 5
Author(s): Hiroki Kurashige, Jun Kaneko, Yuichi Yamashita, Rieko Osu, Yohei Otaka, Takashi Hanakawa, Manabu Honda, Hideaki Kawabata
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pmed.1003416
Predicting suicide attempt or suicide death following a visit to psychiatric specialty care: A machine learning study using Swedish national registry dataCited by: 35
Author(s): Qi Chen, Yanli Zhang-James, Eric J. Barnett, Paul Lichtenstein, Jussi Jokinen, Brian M. D’Onofrio, Stephen V. Faraone, Henrik Larsson, Seena Fazel
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pcbi.1005641
Classification and analysis of a large collection of in vivo bioassay descriptionsCited by: 13
Author(s): Magdalena Zwierzyna, John P. Overington
Software Mentions: 2
Published: over 7 years ago
10.12688/wellcomeopenres.16718.1
An automated approach to identify scientific publications reporting pharmacokinetic parametersCited by: 6
Author(s): Ferran Gonzalez Hernandez, Simon J. Carter, Juha Iso-Sipilä, Paul C. Goldsmith, Ahmed Almousa, Silke Gastine, Watjana Lilaonitkul, Frank Kloprogge, Joseph F. Standing
Software Mentions: 2
Published: over 3 years ago
10.15252/msb.20199405
Drug mechanism‐of‐action discovery through the integration of pharmacological and <scp>CRISPR</scp> screensCited by: 55
Author(s): Emanuel Gonçalvès, Aldo Segura‐Cabrera, Clare Pacini, Gabriele Picco, Fiona M. Behan, Patricia Jaaks, Elizabeth A. Coker, Dieudonne van der Meer, Andrew Barthorpe, Howard Lightfoot, Tatiana Mironenko, Alexandra Beck, Laura L. Richardson, Wanjuan Yang, Ermira Lleshi, James A. Hall, Charlotte Tolley, Caitlin Hall, Iman Mali, Frances Thomas, James A. Morris, Andrew R. Leach, James T. Lynch, Ben Sidders, Claire Crafter, Francesco Iorio, Stephen E. Fawell, Mathew J. Garnett
Software Mentions: 2
Published: over 4 years ago
10.3389/fonc.2021.644994
Preoperative Assessment for Event-Free Survival With Hepatoblastoma in Pediatric Patients by Developing a CT-Based Radiomics ModelCited by: 5
Author(s): Yi Jiang, Jingjing Sun, Yuwei Xia, Yan Cheng, Linjun Xie, Xia Guo, Yingkun Guo
Software Mentions: 2
Published: over 3 years ago
10.3389/fphar.2019.01675
Applying Machine Learning to Ultrafast Shape Recognition in Ligand-Based Virtual ScreeningCited by: 14
Author(s): Etienne Bonanno, Jean-Paul Ebejer
Software Mentions: 2
Published: over 4 years ago
10.15252/msb.20199243
Systematic genetics and single‐cell imaging reveal widespread morphological pleiotropy and cell‐to‐cell variabilityCited by: 32
Author(s): Mojca Mattiazzi Ušaj, Nil Sahin, Helena Friesen, Carles Pons, Matej Ušaj, Myra Paz David Masinas, Ermira Shuteriqi, Aleksei Shkurin, Patrick Aloy, Quaid Morris, Charles Boone, Brenda Andrews
Software Mentions: 2
Published: almost 5 years ago
10.1029/2019GL085870
Probing Slow Earthquakes With Deep LearningCited by: 32
Author(s): Bertrand Rouet‐Leduc, Claudia Hulbert, Ian W. McBrearty, P. A. Johnson
Software Mentions: 2
Published: over 4 years ago
10.1049/htl2.12006
Prediction of hematocrit through imbalanced dataset of blood spectraCited by: 3
Author(s): Cristoforo Decaro, G.B. Montanari, M. Bianconi, Gaetano Bellanca
Software Mentions: 2
Published: over 3 years ago
10.1002/aps3.11377
Species complex delimitations in the genus <i>Hedychium</i> : A machine learning approach for cluster discoveryCited by: 8
Author(s): Preeti Saryan, Shubham Gupta, Vinita Gowda
Software Mentions: 2
Published: over 4 years ago
10.15252/msb.202110267
Behavioral fingerprints predict insecticide and anthelmintic mode of actionCited by: 16
Author(s): Adam McDermott-Rouse, Eleni Minga, Ida Barlow, Luigi Feriani, Philippa H. Harlow, Anthony J. Flemming, André E. X. Brown
Software Mentions: 2
Published: over 3 years ago
10.2196/15547
Applying Machine Learning to Daily-Life Data From the TrackYourTinnitus Mobile Health Crowdsensing Platform to Predict the Mobile Operating System Used With High Accuracy: Longitudinal Observational StudyCited by: 11
Author(s): Rüdiger Pryss, Winfried Schlee, Burkhard Hoppenstedt, Manfred Reichert, Myra Spiliopoulou, Berthold Langguth, Marius Breitmayer, Thomas Probst
Software Mentions: 2
Published: over 4 years ago
10.15252/msb.20188290
Unraveling the hidden universe of small proteins in bacterial genomesCited by: 87
Author(s): Samuel Miravet-Verde, Tony Ferrar, Guadalupe Espadas-García, Rocco Mazzolini, Anas Gharrab, Eduard Sabidò, Luís Serrano, María Lluch‐Senar
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-017-08366-3
Exploring the Sequence-based Prediction of Folding Initiation Sites in ProteinsCited by: 35
Author(s): Daniele Raimondi, Gabriele Orlando, Rita Pancsa, Taushif Khan, Wim Vranken
Software Mentions: 2
Published: about 7 years ago
10.1111/1751-7915.12380
High throughput genomic sequencing of bioaerosols in broiler chicken production facilitiesCited by: 19
Author(s): Kate O’Brien, Michael S. Chimenti, Morgan B. Farnell, Tom Tabler, Thomas B. Bair, Joey Lynn Bray, Matthew W. Nonnenmann
Software Mentions: 2
Published: over 8 years ago
10.1038/s41598-021-83247-4
Conservation machine learning: a case study of random forestsCited by: 11
Author(s): Moshe Sipper, Jason H. Moore
Software Mentions: 2
Published: over 3 years ago
10.1002/ajmg.b.32705
Predictive modeling of schizophrenia from genomic data: Comparison of polygenic risk score with kernel support vector machines approachCited by: 24
Author(s): Timothy Vivian-Griffiths, Emily Baker, Karl Michael Schmidt, Matthew Bracher-Smith, James Walters, Andreas Artemiou, Peter Holmans, Michael O’Donovan, Michael John Owen, Andrew Pocklington, Valentina Escott‐Price
Software Mentions: 2
Published: almost 6 years ago
10.1002/mrm.26318
Multiclass imbalance learning: Improving classification of pediatric brain tumors from magnetic resonance spectroscopyCited by: 28
Author(s): Niloufar Zarinabad, Martin Wilson, Sharon A. Gill, Karen Manias, Nigel P. Davies, Andrew C. Peet
Software Mentions: 2
Published: over 8 years ago
10.3390/biom10030454
Machine Learning to Identify Flexibility Signatures of Class A GPCR InhibitionCited by: 17
Author(s): Joseph Bemister-Buffington, A. Wolf, Sebastian Raschka, Leslie A. Kuhn
Software Mentions: 2
Published: over 4 years ago
10.1002/advs.202100104
A Noninvasive Multianalytical Approach for Lung Cancer Diagnosis of Patients with Pulmonary NodulesCited by: 7
Author(s): Quan‐Xing Liu, Dong Zhou, Tiancheng Han, Lü Xiao, Bing Han, Man-Yuan Li, Guixue Yang, Qingyuan Li, Zhihua Pei, Yuanyuan Hong, Yaxi Zhang, Weizhi Chen, Hong Zheng, Ji He, Ji‐Gang Dai
Software Mentions: 2
Published: over 3 years ago
10.3390/s21186270
Automated Calibration of RSS Fingerprinting Based Systems Using a Mobile Robot and Machine LearningCited by: 7
Author(s): Marcin Kołakowski
Software Mentions: 2
Published: about 3 years ago