Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.15252/msb.20209522

https://doi.org/10.15252/msb.20209522

Cited by: 19
Author(s): Samantha O'Connor, Heather Feldman, Sonali Arora, Pia Hoellerbauer, Chad M. Toledo, Philip Corrin, Lucas Carter, Megan Kufeld, Hamid Bolouri, Ryan Basom, Jeffrey J. Delrow, José L. McFaline-Figueroa, Cole Trapnell, Steven M. Pollard, Anoop P. Patel, Patrick J. Paddison, Christopher Plaisier
Published: almost 3 years ago

Software Mentions 10

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: ReactomePA
Reactome Pathway Analysis
Papers that mentioned: 171
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: ccAF
Classify scRNA-seq profiling with highly resolved cell cycle phases.
Papers that mentioned: 1
pypi: CellProfiler

Papers that mentioned: 1,504
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: learn
A simple printer of nested lines
Papers that mentioned: 154
pypi: scanpy
Single-Cell Analysis in Python.
Papers that mentioned: 68
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105